BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD04RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1350 0.0
>3x_Contig1383
Length = 6139
Score = 1350 bits (681), Expect = 0.0
Identities = 848/884 (95%), Gaps = 15/884 (1%)
Strand = Plus / Plus
Query: 49 tatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaactaatgtt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 tatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaactaatgtt 2252
Query: 109 gaagggttatttattgctagtggccactcttgttggggtattaacaacgctccggcaaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 gaagggttatttattgctagtggccactcttgttggggtattaacaacgctccggcaaca 2312
Query: 169 ggtaaagttatgagtgaactattacttgacggtgaagctaaatccgctgatattagtgca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 ggtaaagttatgagtgaactattacttgacggtgaagctaaatccgctgatattagtgca 2372
Query: 229 ttggatcccagcttatactttgatgcatctatctttgaataaaatgaatccattgcaaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 ttggatcccagcttatactttgatgcatctatctttgaataaaatgaatccattgcaaag 2432
Query: 289 tttttatgtgttttactatcatttcatttctttcattctgtcggcatataaacatcaatc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 tttttatgtgttttactatcatttcatttctttcattctgtcggcatataaacatcaatc 2492
Query: 349 gatttctaacctctttaataatttaattactgccatcattatcccgttaaatatttttct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 gatttctaacctctttaataatttaattactgccatcattatcccgttaaatatttttct 2552
Query: 409 atatcatgtattcagagaacacacaatttgcaaacccataaccattcattatcattatat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 atatcatgtattcagagaacacacaatttgcaaacccataaccattcattatcattatat 2612
Query: 469 actgtatatttaccagttactatttaaaatctatgtggttcttgaaagaatgaagtttga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 actgtatatttaccagttactatttaaaatctatgtggttcttgaaagaatgaagtttga 2672
Query: 529 atggaaactccatattttcatttattcatattcttgaaagcagctctcgctccatttgca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 atggaaactccatattttcatttattcatattcttgaaagcagctctcgctccatttgca 2732
Query: 589 gcatccgtattgcttcttttctgtttgttcagagtgtacagtacctctgctctactactt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 gcatccgtattgcttcttttctgtttgttcagagtgtacagtacctctgctctactactt 2792
Query: 649 gaaancaacatattatctttgcggtgacttttcgtgggctttgatgaagtggaacaatgt 708
|||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
Sbjct: 2793 gaaacaaacatattatc-ttgcggtgac-tttcgt-ggctttgatgaagtggaacaagtt 2849
Query: 709 tcaagcgggtttcaaacttaaggtatcaaactttctttggtcaatttctcagactcccaa 768
||| || ||||||||||||||| |||| ||||||| ||||||||||||||||||| ||||
Sbjct: 2850 tcaggc-ggtttcaaacttaagttatc-aactttc-ttggtcaatttctcagact-ccaa 2905
Query: 769 gccgggcttagtncttgaaataaactataaacccatttttgcccttgaattatcaacgaa 828
| ||| |||||| |||| ||||| |||| |||||||||||| |||||||||| |||||
Sbjct: 2906 ggcggccttagt-cttg-aataagctatcaacccatttttg-ccttgaattaatcacgaa 2962
Query: 829 atcactc-gagcacttttttggtaatgcaatcaaccctacctttagatttggaacttttc 887
||||||| |||||| ||||||||||||||||||||| |||| |||||||| |||||| ||
Sbjct: 2963 atcactcggagcac-tttttggtaatgcaatcaaccatacc-ttagattt-gaacttctc 3019
Query: 888 gaattttaggtattctgaagttttaattttaataaaactctaaa 931
|||| |||||||| ||| |||||| | ||| || ||||||||||
Sbjct: 3020 gaatattaggtatcctg-agtttttagtttcattaaactctaaa 3062
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8028
Number of Sequences: 1807
Number of extensions: 8028
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)