BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD05FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1542 0.0
>3x_Contig1529
Length = 11812
Score = 1542 bits (778), Expect = 0.0
Identities = 826/838 (98%), Gaps = 3/838 (0%)
Strand = Plus / Minus
Query: 87 ccgcttcaaagtccttaatatctgactgtacttgcaattgggttttgaaggttaatacca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2488 ccgcttcaaagtccttaatatctgactgtacttgcaattgggttttgaaggttaatacca 2429
Query: 147 agccctcgagaatagataagataaatcgtggattaacatcgttgttcttaggtagggata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 agccctcgagaatagataagataaatcgtggattaacatcgttgttcttaggtagggata 2369
Query: 207 tcggatccaaaaaatgatgataatgtgaatcaaatcctaagtctgaaaataacttgcaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2368 tcggatccaaaaaatgatgataatgtgaatcaaatcctaagtctgaaaataacttgcaaa 2309
Query: 267 cctcataaaactggtcattcgatatggatcttgtctcaacctcaatttcaaaccctcttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2308 cctcataaaactggtcattcgatatggatcttgtctcaacctcaatttcaaaccctcttc 2249
Query: 327 taattagatcgttcaactcagaatataatttatatccaacaatggtgaccagccattgta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2248 taattagatcgttcaactcagaatataatttatatccaacaatggtgaccagccattgta 2189
Query: 387 cgagaagtgagtaatgtcgtatatttaacccgagtttgtgtagtgctcgctctaaaggta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2188 cgagaagtgagtaatgtcgtatatttaacccgagtttgtgtagtgctcgctctaaaggta 2129
Query: 447 agaaaagaggctgtattttccttagttgaagttttattgttaggatgtgttttgccaagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2128 agaaaagaggctgtattttccttagttgaagttttattgttaggatgtgttttgccaagc 2069
Query: 507 tcccaatagtcaatggactttcaatagtgttagtcatatgctgcatttcattgtcaaagc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2068 tcccaatagtcaatggactttcaatagtgttagtcatatgctgcatttcattgtcaaagc 2009
Query: 567 tttgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatccattag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008 tttgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatccattag 1949
Query: 627 catccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatcttttaact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 catccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatcttttaact 1889
Query: 687 catcctctgatttattcactaaattaccgntagtgaaccatgttagctcttttccgtttc 746
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1888 catcctctgatttattcactaaattaccg-tagtgaaccatgttagctcttttccgtttc 1830
Query: 747 gaatattcatgggaagttaatagttcatatcttttcaggtgtcatacacagggctcaacg 806
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1829 gaatattcatgggaagttaatagttcatatc-tttcaggtgtcatacacagggctcaacg 1771
Query: 807 tataacaagaagctctattgctcctgccactttcttggtggagtgcatcttgaatggagg 866
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 1770 tataacaagaagctctattgctcctgccacttctttgttgaagtgcatcttgaatggagg 1711
Query: 867 tttgactatttgactatcttgtctgggcc-aaaaacttggaattttggcgattttgca 923
|||||||||| |||||||||||| |||| ||||||| | ||||||||||||||||||
Sbjct: 1710 tttgactattgaactatcttgtcttggccaaaaaactggaaattttggcgattttgca 1653
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5808
Number of Sequences: 1807
Number of extensions: 5808
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)