BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD06RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1515 0.0
>3x_Contig1775
Length = 26320
Score = 1515 bits (764), Expect = 0.0
Identities = 816/831 (98%), Gaps = 2/831 (0%)
Strand = Plus / Plus
Query: 49 tcataccatttcgtttccgtctccttcttttgatgtccttcatcgcgggccactattctg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23941 tcataccatttcgtttccgtctccttcttttgatgtccttcatcgcgggccactattctg 24000
Query: 109 gaagatctctttcttctgaccattagagcttgcatagactgttgtttcaatctgttagca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24001 gaagatctctttcttctgaccattagagcttgcatagactgttgtttcaatctgttagca 24060
Query: 169 tacaatttacgtccgtaaacctctgcctctgcatggtattctattaagccttggaaaaat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24061 tacaatttacgtccgtaaacctctgcctctgcatggtattctattaagccttggaaaaat 24120
Query: 229 tcttgaaaatcaatatcatctatcgtttgtagatattcgacgaagcttctataatcatgt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24121 tcttgaaaatcaatatcatctatcgtttgtagatattcgacgaagcttctataatcatgt 24180
Query: 289 gctaacgtttcataatcgatcttgacatcatttaaataggcgtcgatctcatcggaataa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24181 gctaacgtttcataatcgatcttgacatcatttaaataggcgtcgatctcatcggaataa 24240
Query: 349 tccaaatgaattacgtctatagtggcttctgtctcttcgacaagaacacaattctgtaac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24241 tccaaatgaattacgtctatagtggcttctgtctcttcgacaagaacacaattctgtaac 24300
Query: 409 tttataggtatgttcaatccgtttgattctggtttgaccgatacctgtttccttataatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24301 tttataggtatgttcaatccgtttgattctggtttgaccgatacctgtttccttataatc 24360
Query: 469 tttccagtgggtaagaccaccaaagatgtagcatcattctcccaaatctcagggaattgg 528
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24361 tttccagtgggtaagaccaccaaagaggtagcatcattctcccaaatctcagggaattgg 24420
Query: 529 aagctatccaaatggttttgtaaatagttcctaaaaccaatgttctttctttctaccaat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24421 aagctatccaaatggttttgtaaatagttcctaaaaccaatgttctttctttctaccaat 24480
Query: 589 ttaatgacatggaaaatgatctcgaactgttttaatatgttgagatccgcgaatttgcta 648
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 24481 ttaatgacatggaaaatgatctcgaactgttgtaatatgttgagatccgcgaatctgcta 24540
Query: 649 ttgatatcctctgtgtaccaaagtagagatttgtttaatttcgaattaaaaatgtggtac 708
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 24541 ttgatatcctctgtgtaccaaagtagagatttgtttaattccgaattaaaaatgtggtac 24600
Query: 709 ttcactatttcatcccaatgtttcaaagataccgtcttattctgttctaaagacctgatc 768
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 24601 ttcactatttcatcccaatgtttcaaggataccgtcttatcctgttctaaagacctgatc 24660
Query: 769 aacctcaacaagatactcttngataaattcagtatatgacccctctttcgtcctgatccg 828
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 24661 aacctcaacaagatactcttgaataaattcagtatatga-ccctc-ttcgtcctgatccg 24718
Query: 829 tgctggccccttttggattctccgattgtaccaaatccaacgattcatttt 879
||||| |||| ||||||| ||||||||| |||||||||||||| |||||||
Sbjct: 24719 tgctgcccccatttggatcctccgattgaaccaaatccaacgaatcatttt 24769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7631
Number of Sequences: 1807
Number of extensions: 7631
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)