BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD07RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1323 1292 0.0
>3x_Contig1323
Length = 7472
Score = 1292 bits (652), Expect = 0.0
Identities = 660/663 (99%)
Strand = Plus / Plus
Query: 48 aacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgattcg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 aacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgattcg 3623
Query: 108 ctcatcactgaagtcacatgggtcggaaaccatgaaattattgcaaaagtttcagatcgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 ctcatcactgaagtcacatgggtcggaaaccatgaaattattgcaaaagtttcagatcgt 3683
Query: 168 tcttcagacattttgaccgtcatcatggtagatgccgcggatggatcgcgtagtgaagtg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 tcttcagacattttgaccgtcatcatggtagatgccgcggatggatcgcgtagtgaagtg 3743
Query: 228 tctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccacttttgtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3744 tctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccacttttgtt 3803
Query: 288 cctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggttgat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3804 cctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggttgat 3863
Query: 348 ggctacaatcatctcgtatactttacaacaaacgtaaccacagagattccaagtgttgtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3864 ggctacaatcatctcgtatactttacaacaaacgtaaccacagagattccaagtgttgtc 3923
Query: 408 ttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttcaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3924 ttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttcaac 3983
Query: 468 aatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtcaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3984 aatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtcaat 4043
Query: 528 ttagaaaggccacagaaggtttatgctgttaccgatgaaaggttaaatgggtactattct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4044 ttagaaaggccacagaaggtttatgctgttaccgatgaaaggttaaatgggtactattct 4103
Query: 588 gcttctttctcagcangcgcaagattcttgctattgaactacttatgaccagatgtccct 647
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4104 gcttctttctcagcaggcgcaagattcttgctattgaactacttaggaccagatgtccct 4163
Query: 648 tatcaaaagataattgatttaaagtcagacactaaagattagaatattcgaggaaatatc 707
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4164 tatcaaaagataattgatttaaagtcagacactaaagataagaatattcgaggaaatatc 4223
Query: 708 atc 710
|||
Sbjct: 4224 atc 4226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6403
Number of Sequences: 1807
Number of extensions: 6403
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)