BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD08FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1256 1225 0.0
>3x_Contig1256
Length = 6519
Score = 1225 bits (618), Expect = 0.0
Identities = 696/713 (97%), Gaps = 7/713 (0%)
Strand = Plus / Minus
Query: 87 taatgtagttgatctacccctagcatccgttgaacaacaagctaagaaatgttttaccac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 taatgtagttgatctacccctagcatccgttgaacaacaagctaagaaatgttttaccac 1993
Query: 147 ataattataaacagttttctcgtctgaggtcattctattatcagttttcgcaatgtcaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1992 ataattataaacagttttctcgtctgaggtcattctattatcagttttcgcaatgtcaac 1933
Query: 207 acaaagaattggatgaataggtggatgcgcctgatcatcatgattaccgcttcttggcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 acaaagaattggatgaataggtggatgcgcctgatcatcatgattaccgcttcttggcca 1873
Query: 267 ttggtatttatttgtactagttgaattttcgttcataaggtttgtgacataaggacccca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1872 ttggtatttatttgtactagttgaattttcgttcataaggtttgtgacataaggacccca 1813
Query: 327 ttcgctatgaccctgatgtttattgagcaatgatttgaggtccgtctttgctgggaactt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1812 ttcgctatgaccctgatgtttattgagcaatgatttgaggtccgtctttgctgggaactt 1753
Query: 387 atccgtttcagttcttgggtatgagatgtaaccttgttggtataatttttccgcagcgtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 atccgtttcagttcttgggtatgagatgtaaccttgttggtataatttttccgcagcgtc 1693
Query: 447 caaagttttcttagcacttagtttgaagaaccgggaacaatttttctgcaattcgaccgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 caaagttttcttagcacttagtttgaagaaccgggaacaatttttctgcaattcgaccgt 1633
Query: 507 cgttaggggcaaaggtcgaaacttctttgtatctttgctagaaacatgtattacttttgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 cgttaggggcaaaggtcgaaacttctttgtatctttgctagaaacatgtattacttttgc 1573
Query: 567 cctatcctcgcatgttccgatgncatgttcataaatggacagtactgccagtctatcgaa 626
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1572 cctatcctcgcatgttccgatgcaatgttcataaatggacagtactgccagtctatcgaa 1513
Query: 627 aagatgacctcttttccactgggattttactttactctctgagccatcgagatccttgac 686
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1512 aagatgacctctttcccactggaattttactttactctctgagccatcgagatccttgac 1453
Query: 687 ag-gagattatatatgcccaaaattgttctgggattaaatttataactcttttcttatct 745
|| ||| | ||||||| ||||||||||||||| || ||||||||||||| |||| |||||
Sbjct: 1452 agagag-taatatatg-ccaaaattgttctggtataaaatttataactc-tttcatatct 1396
Query: 746 atcaacgacgaaaacccaacgtgggggatttgacaaggttccctacgatataa 798
|||||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||
Sbjct: 1395 atcaacgacg-aaacccaacgt-ggggaattgacaa-gttccgtacgatataa 1346
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6400
Number of Sequences: 1807
Number of extensions: 6400
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)