BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD08RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1230 603 e-172
>3x_Contig1230
Length = 5522
Score = 603 bits (304), Expect = e-172
Identities = 470/517 (90%), Gaps = 7/517 (1%)
Strand = Plus / Minus
Query: 336 gctactggggccctgttccagacatgcggtaagctctacagaagaaacttcagaccaata 395
||||||||||||||||||||||||||||||||| | || |||||||| || ||| ||||
Sbjct: 5220 gctactggggccctgttccagacatgcggtaagatataaagaagaaaattaagaaaaata 5161
Query: 396 ttcttagccaaagacggtaaaactccattgagatcgaaaataatctacgatgtaatctcc 455
|| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct: 5160 ttattagaaaaagaaggtaaaactccattgagatagaaaataatatacgatgtaatataa 5101
Query: 456 ttttatgtgactaaaatttcctttgggtatcttgttcaaccatttgtcattcttgacttt 515
||||||||||||||||||| ||||||||| ||||| || |||||| |||||||| |||
Sbjct: 5100 ttttatgtgactaaaatttaatttgggtatattgttaaaaaatttgtaattcttgaattt 5041
Query: 516 aagatatcattatatggatggaaaacggtcaatttttatatccatattggaatactaata 575
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5040 aagaaatcattatatggatggaaaacggtcaatttttatatccatattggaatactaata 4981
Query: 576 actntctttgcattcaaaggtccattcagtaaacagtttaccaactggttgaagagc-tn 634
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4980 actttctttgcattcaagggtccattcagtaaacagtttaccaactggttgaagagcttc 4921
Query: 635 cagccagtgcanatagaattgaagagac-aaagataatggagaaagaagtggcagcaact 693
||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 4920 cagccagtgcaaatagaattgaagagacaaaagaaaatggagaaagaagtggcagcaact 4861
Query: 694 tcgggtacccttgtttcagttatagccgattagcacgaatttgagcgcgatgatttagaa 753
||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 4860 tcgggtacccttggttcagttatagccgataagcacgaatttgagcgcgatgaattagaa 4801
Query: 754 ggcgagcctgagcatgctattggatcttaggaattccttctgttaagctttgacaaaaga 813
||||||| ||||||||||| |||||| |||| |||||||||||| |||||||||||| |
Sbjct: 4800 ggcgagcttgagcatgcta-tggatc-taggtattccttctgtt-agctttgacaaagaa 4744
Query: 814 caatttcgattattgcaggggaagacttacctgaatt 850
||| ||||| || |||| |||||||||||| ||||||
Sbjct: 4743 caa-ttcga-taatgcaagggaagacttacatgaatt 4709
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6872
Number of Sequences: 1807
Number of extensions: 6872
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)