BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD09RM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1080 1292 0.0
>3x_Contig1080
Length = 4249
Score = 1292 bits (652), Expect = 0.0
Identities = 715/732 (97%), Gaps = 3/732 (0%)
Strand = Plus / Plus
Query: 52 gcttaaagatgagttacttctccaataaagcacagaagggtttcagaaccttccagtttt 111
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2700 gcttaaagatgagt-acttctccaa-aaagcacagaagggtttcagaaccttccagtttt 2757
Query: 112 gattttatgtcaagagcggttcatgggacagcttttcaagaatatttgaagagagatcgt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 gattttatgtcaagagcggttcatgggacagcttttcaagaatatttgaagagagatcgt 2817
Query: 172 tcaagctttgtcatggaacaagatgttagggtatggaggggaatgctggtttgcgatatg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818 tcaagctttgtcatggaacaagatgttagggtatggaggggaatgctggtttgcgatatg 2877
Query: 232 gtttgtgaattcaaatgctcctccgtttggaggcaaaaacaaggtaatatgaaagatggc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2878 gtttgtgaattcaaatgctcctccgtttggaggcaaaaacaaggtaatatgaaagatggc 2937
Query: 292 ttacatgaattgttcttttatgacaaaaaacaagaagcaaataatcgcaatgaaagcgat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2938 ttacatgaattgttcttttatgacaaaaaacaagaagcaaataatcgcaatgaaagcgat 2997
Query: 352 tctgttgctagaaatgaaactgtagtcgacttggagctggattcccaatcattctcatta 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2998 tctgttgctagaaatgaaactgtagtcgacttggagctggattcccaatcattctcatta 3057
Query: 412 cttggagtttctaccgagatattagataatcatacccaacaccaatctaatataacacaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3058 cttggagtttctaccgagatattagataatcatacccaacaccaatctaatataacacaa 3117
Query: 472 actgaacggtttctaaaattcttgcggaaacagacgttccctataaatttccaagtggta 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3118 actgaacggtttctaaaattcttgcggaaacagacgttccctataaatttccaagtggta 3177
Query: 532 aagacagtaagcctcgacggtgaaacaaattcgacagggtatgaagctgcaacttctttt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3178 aagacagtaagcctcgacggtgaaacaaattcgacagggtatgaagctgcaacttctttt 3237
Query: 592 cttacagatacttacagagatatggatgttgttgttgtggacatatttttaagtgttaac 651
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 3238 cttacagatacttacagagatatggatgttgttgttgtggacaaatttttaagtgtaaac 3297
Query: 652 gcttttcgtccttaatacgtggacgaacctttgatgaagttagattcaatacatgacctt 711
|||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct: 3298 gcttttcgtcctaaatacgtggacgagcctctgatgaagttagattcaatacatga-cta 3356
Query: 712 tctgggagttaattgagaatacagagattctcatgtagctttaaatatcctctcctcatt 771
||||| ||| ||| |||| |||||||| |||||||||||||||||| |||||||||||
Sbjct: 3357 tctggaagtaaatgaagaagacagagatgctcatgtagctttaaataatctctcctcatt 3416
Query: 772 catcaagttttt 783
||||||||||||
Sbjct: 3417 catcaagttttt 3428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8728
Number of Sequences: 1807
Number of extensions: 8728
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)