BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD10FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1667 1421 0.0
>3x_Contig1667
Length = 12071
Score = 1421 bits (717), Expect = 0.0
Identities = 753/761 (98%), Gaps = 3/761 (0%)
Strand = Plus / Plus
Query: 87 aactgggttcacccagtaaatttaccaaactggaggatgacataattattgaacactatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 aactgggttcacccagtaaatttaccaaactggaggatgacataattattgaacactatt 5570
Query: 147 ctcctggattaattaatgatcaaactattgattatgataaagactcaaaatccattattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 ctcctggattaattaatgatcaaactattgattatgataaagactcaaaatccattattt 5630
Query: 207 caaggttaacaccaaaaaaatttcagaacgttcctctgatgtgggcagctgacccagtgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 caaggttaacaccaaaaaaatttcagaacgttcctctgatgtgggcagctgacccagtgc 5690
Query: 267 atttcaattccgatgacggtattgtctttccccttgacgataagtacactgcagatgcgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 atttcaattccgatgacggtattgtctttccccttgacgataagtacactgcagatgcgg 5750
Query: 327 atatcagcaatcaatccaacgtacgtttcaggcagcatttctcctttgacgaaacagcga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5751 atatcagcaatcaatccaacgtacgtttcaggcagcatttctcctttgacgaaacagcga 5810
Query: 387 acctagtagccagttaccatggatacctcaataggaacgttcccatatacgggaagattt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 acctagtagccagttaccatggatacctcaataggaacgttcccatatacgggaagattt 5870
Query: 447 atatatcggacaagaatatatgtttccgatctcttttgcctggagttagcactaaaacgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 atatatcggacaagaatatatgtttccgatctcttttgcctggagttagcactaaaacgg 5930
Query: 507 tgctaccgttggaggatgttgagaactgctacaaggaaacgcgttttagatttggttatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 tgctaccgttggaggatgttgagaactgctacaaggaaacgcgttttagatttggttatt 5990
Query: 567 ttggtttagtaattgttattcacggtcatgaagaactattcttagaatttggtaacaaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5991 ttggtttagtaattgttattcacggtcatgaagaactattcttagaatttggtaacaaga 6050
Query: 627 atgctcgagatgattgtgagtttgtgatgattaaagtcatggatgctgtaagtagtcatc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051 atgctcgagatgattgtgagtttgtgatgattaaagtcatggatgctgtaagtagtcatc 6110
Query: 687 ggtcaacgctaaaacgaaagtctacagctgaagttgttcaccgcctctcagaagctgcga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6111 ggtcaacgctaaaacgaaagtctacagctgaagttgttcaccgcctctcagaagctgcga 6170
Query: 747 gtctc-aattattagaagataaaa-tagtgaacaaggctttgat-tttcattaatcgttg 803
||||| ||||||||||||| |||| ||||||||||||||||||| || ||||||||||||
Sbjct: 6171 gtctcaaattattagaagaaaaaattagtgaacaaggctttgatattccattaatcgttg 6230
Query: 804 aaaaaaacccgtattttaccactgaaatcaaacctattaaa 844
|||||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 6231 aaaaaaacccgtatttcaccactgtaatcaaacctagtaaa 6271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5936
Number of Sequences: 1807
Number of extensions: 5936
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)