BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZD10RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig304 1513 0.0
>3x_Contig304
Length = 1230
Score = 1513 bits (763), Expect = 0.0
Identities = 807/820 (98%), Gaps = 2/820 (0%)
Strand = Plus / Plus
Query: 43 gctttcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gctttcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatg 134
Query: 103 ctaaggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctaaggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaac 194
Query: 163 ttgtccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttgga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttgtccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttgga 254
Query: 223 aaagagcattggttgggcatggtatatcaggggatattagctggctagaatcgttggaca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaagagcattggttgggcatggtatatcaggggatattagctggctagaatcgttggaca 314
Query: 283 taagattaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 taagattaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacg 374
Query: 343 gaagacaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaagacaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttc 434
Query: 403 ataacgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatatag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ataacgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatatag 494
Query: 463 gaacaagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaacaagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatt 554
Query: 523 tatattgtgtggagcagctcgaaaaacaagggaagcgtaaaagatatcgtggaaacaatt 582
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 555 tatattgtgtggagcagctcgaaaaacaagggaagcgtaaaagaaatcgtggaaacaatt 614
Query: 583 tctcacaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatata 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tctcacaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatata 674
Query: 643 gatgtgcatacngtatgctcatatatatattatattttgctgcccgtaatcacagttcaa 702
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gatgtgcatacgttatgctcatatatatattatattttgctgcccgtaatcacagttcaa 734
Query: 703 cctttcttgtcntcagccagaanatgtttgatttcctactgtttgtcgtacatatgtttc 762
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 735 cctttcttgtctccagccagaaaatgtttgatttcctactgtttgtcgtacatatg-ttc 793
Query: 763 gtctacctcacaactttttctaaagtatt-aaaaagaaagaaaatttattttcaagagtt 821
||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct: 794 gtctacctcacaactttttctaaagtattaaaaaagagagaaaatttatattcaagagta 853
Query: 822 attgagaaagacggtttagacctaccgatgaggtgaggct 861
|| |||||||||||| ||||||||||||||||||||||||
Sbjct: 854 atagagaaagacggtatagacctaccgatgaggtgaggct 893
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7399
Number of Sequences: 1807
Number of extensions: 7399
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)