BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE01FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1407 0.0
>3x_Contig1771
Length = 25932
Score = 1407 bits (710), Expect = 0.0
Identities = 810/834 (97%), Gaps = 7/834 (0%)
Strand = Plus / Minus
Query: 87 atggatttccttaccgactcttacaaccaaggtggtatcgtttcaatcctttcattaaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 atggatttccttaccgactcttacaaccaaggtggtatcgtttcaatcctttcattaaat 1452
Query: 147 ggtttgtttgaacttatgaaaaaatacaacctagaatatccaaatttctactcaaaacta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 ggtttgtttgaacttatgaaaaaatacaacctagaatatccaaatttctactcaaaacta 1392
Query: 207 tatcagcttctaactccagaagtaatgcacgttaagtacagatcaagatttttcagatta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 tatcagcttctaactccagaagtaatgcacgttaagtacagatcaagatttttcagatta 1332
Query: 267 gtggacacctttctatcttctacacatttatccgcacaactggtagcgtcattcatcaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 gtggacacctttctatcttctacacatttatccgcacaactggtagcgtcattcatcaaa 1272
Query: 327 cgtttggcacgtttatccgtatcggcaccaccaggtgctattgtttctataataccattc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 cgtttggcacgtttatccgtatcggcaccaccaggtgctattgtttctataataccattc 1212
Query: 387 gtgtacaatctaatcagaaagcatcctacatgtatgattctattacacgatccagaatac 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1211 gtgtacaatctaatcagaaagcatcctacatgtatgattctattacacgatccataatac 1152
Query: 447 atcgactgcgattcaaagaaaaggcaagaatatctagatccattcaacaatgaagaaacc 506
||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1151 atctactgcgattcaaataaaattcaataatatctagatccattcaacaatgaagaaacc 1092
Query: 507 aatccagaacttacaaatgctctttcctcctcagtatgggagctagaaacgctaatgaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 aatccagaacttacaaatgctctttcctcctcagtatgggagctagaaacgctaatgaat 1032
Query: 567 cactaccatccaaacgtagccactttagcgaagattttccaacaacctttccaaaagtta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 cactaccatccaaacgtagccactttagcgaagattttccaacaacctttccaaaagtta 972
Query: 627 agctacaacatcgaagatttcttagattggtcttacgattcacttttgcaagcagaaacc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 agctacaacatcgaagatttcttagattggtcttacgattcacttttgcaagcagaaacc 912
Query: 687 aatagatagctgaagatccaacctgctcttgaattcg-aaggtttgaaaacaatttcgaa 745
|||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 911 aatagaaagctgaagatccaacctgctcttgaattcgaaaggtttgaaacaattttcgaa 852
Query: 746 tcaggttctgattcagcattcctacccttcataaaa-ggtaaatacataatttcaagtag 804
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 851 tcaggttctgattcagcattcctacccttcataaaatggtaaatacataatttcaagtag 792
Query: 805 aaaacttaagtagttcaatttccaatttgagtcctttcttttactttcgcaaaatct-tt 863
|||||||||||||||||| |||||| |||||| |||||||| |||||||| |||||| ||
Sbjct: 791 aaaacttaagtagttcaa-ttccaaattgagtactttctttcactttcgc-aaatctctt 734
Query: 864 tacattacatctcatcacatcngccgtaatatgaaaacatccgggatgaaaaaa 917
|||||||||||||||||||| |||||||||| |||||| || ||||||||||
Sbjct: 733 cacattacatctcatcacatc-gccgtaatattgaaacat-cgagatgaaaaaa 682
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7059
Number of Sequences: 1807
Number of extensions: 7059
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)