BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE01RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1417 1340 0.0
>3x_Contig1417
Length = 10492
Score = 1340 bits (676), Expect = 0.0
Identities = 796/823 (96%), Gaps = 10/823 (1%)
Strand = Plus / Minus
Query: 43 tagactattacttcaactatacaatagataaaagagcaaaagatatctgggttggtaaaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 tagactattacttcaactatacaatagataaaagagcaaaagatatctgggttggtaaaa 1230
Query: 103 acgactgcggagttacaactgtatagaacagtacggtctaatcattcgatacgtttctga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 acgactgcggagttacaactgtatagaacagtacggtctaatcattcgatacgtttctga 1170
Query: 163 acccgagtcaacccagacgtacaaattgaatgcggggacctatttggtgagctggattca 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 acccgagtcaacccagacgtacaaattgaatgcggggacctatttggtgagctggattca 1110
Query: 223 ctttagcatgatcacattctttctacctcaatatgaaacaaaaagaaggtgtctcatgaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 ctttagcatgatcacattctttctacctcaatatgaaacaaaaagaaggtgtctcatgaa 1050
Query: 283 tcatacctatagatcacacgattcctggtccttccttttctttcctctctgcgcttcgga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 tcatacctatagatcacacgattcctggtccttccttttctttcctctctgcgcttcgga 990
Query: 343 agcttttgcctcggatcataagggaatctccttccctttctgtacgatgcgatgcatgaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 agcttttgcctcggatcataagggaatctccttccctttctgtacgatgcgatgcatgaa 930
Query: 403 atattgctaaatgaaaccatcatccggatctttttttccatgaagtcagccatacgcttc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 atattgctaaatgaaaccatcatccggatctttttttccatgaagtcagccatacgcttc 870
Query: 463 cactcagaatactccgcacaatagaaaactgtttctggaaaaaaaacatccgcgggttac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cactcagaatactccgcacaatagaaaactgtttctggaaaaaaaacatccgcgggttac 810
Query: 523 caaatcgtgcatgatttacagtcgttccgagcaattatggtatctaaagataccagtaaa 582
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 809 caaatcgtgcatgatttacagtcgttccgagcaattagggtatctaaagaaaccagtaaa 750
Query: 583 aaaactttcccgagttcatagccattttcttgccattttggggttcttggtagtcactgg 642
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aaaac-ttcccgagttcatagccattttcttgccattttggggttcttggtagtcactgg 691
Query: 643 tactactgtgttttcagaaatgggccatcgggtttgcagtacnggtactttactttaatt 702
||||||||||||| |||||||||||||||||||| ||||| | ||||||||||| |||
Sbjct: 690 tactactgtgtttccagaaatgggccatcgggttgcaagtacggttactttacttt-att 632
Query: 703 tgatttattcagggaaagcacagaagc-gaaaaggtttatgacttcagaaatgatt-aac 760
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 631 tgatttattcagggaaagcacagaagcagaaaaggtttatgacttcagaaatgattaaac 572
Query: 761 ctgcttttaatacg-aagaaaaaagaaagtttgtgaaagagcct-cggacc-aaatc-ag 816
|||||||| |||| |||||||| |||||||| |||||||||| | |||| ||||| ||
Sbjct: 571 ttgcttttagtacgaaagaaaaatgaaagttttggaaagagcctacagaccaaaatcaag 512
Query: 817 actggttttgaccc-ctttccttgtggaacgtttaattttttt 858
|||| | ||||||| |||||||||| |||||||| ||||||||
Sbjct: 511 actgatattgacccactttccttgt-gaacgttttattttttt 470
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7170
Number of Sequences: 1807
Number of extensions: 7170
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)