BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE02FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1092 0.0
>3x_Contig1742
Length = 17167
Score = 1092 bits (551), Expect = 0.0
Identities = 605/619 (97%), Gaps = 3/619 (0%)
Strand = Plus / Minus
Query: 306 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 7732
Query: 366 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 7672
Query: 426 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 7612
Query: 486 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7611 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 7552
Query: 546 gaaataaagtttcggtaattttgatagttcccttataatcaatgcagcctcttgcaccga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551 gaaataaagtttcggtaattttgatagttcccttataatcaatgcagcctcttgcaccga 7492
Query: 606 ttgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7491 ttgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 7432
Query: 666 ctctttgataattggttttgtcaaattttcgaagtcattaaatgccaaatcaacaccgat 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7431 ctctttgataattggttttgtcaaattttcgaagtcattaaatgccaaatcaacaccgat 7372
Query: 726 gatatcattttcagacatccatctaaatagaatttctaactgttctgaagaagctatctg 785
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7371 gatatcattttcagacatccatctaaatagaatttctaactgttctgaggaagctatctg 7312
Query: 786 agattgagcgagacccaacttacgttttcttggaaattcggttcttagttgaaggaaacg 845
||||||||||||||||||||||||||| |||| |||||| |||||||||||| | |||||
Sbjct: 7311 agattgagcgagacccaacttacgtttccttgaaaattc-gttcttagttgaggaaaacg 7253
Query: 846 cgtttatcatattttcgaaagtgttgcatgttattggccaaaggaacacccatggaggag 905
||||||||||||||||||||||| |||| ||||||||| |||| |||| |||| ||||||
Sbjct: 7252 cgtttatcatattttcgaaagtg-tgcaagttattggcaaaagaaaca-ccattgaggag 7195
Query: 906 tagctcttttaatggttta 924
|||||||| || |||||||
Sbjct: 7194 tagctcttctagtggttta 7176
Score = 408 bits (206), Expect = e-114
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 87 agcagagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8010 agcagagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 7951
Query: 147 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7950 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 7891
Query: 207 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7890 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 7831
Query: 267 gtagttgaagtccaagttaatcaact 292
||||||||||||||||||||||||||
Sbjct: 7830 gtagttgaagtccaagttaatcaact 7805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7192
Number of Sequences: 1807
Number of extensions: 7192
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)