BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE02RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig793 502 e-142
3x_Contig956 426 e-119
>3x_Contig793
Length = 2190
Score = 502 bits (253), Expect = e-142
Identities = 337/357 (94%), Gaps = 6/357 (1%)
Strand = Plus / Plus
Query: 510 cttaatcacaagggcgtcattcatcggagttttttttttaatgaatgactctgtacaagt 569
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 59 cttaatcacaagg-cgtcattcatcggagttttttttt-aatgaatgactctgtacaagt 116
Query: 570 ttggttttagctaggtgatttattggaacactttcttaaattgagagctaatactggacc 629
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 117 ttggttttagctaggtgatttattggaacactctcttaaattgagagctaatactggacc 176
Query: 630 tgatagcagctggagatgccttcaattcgcctggtagtgttttccagtcaatttttccga 689
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 177 tgatagcagctggagatgccttcaattcgcctggtagtgttttccagtcaatatttccga 236
Query: 690 agacctgcttc-attgtatagatggctctgattcttttagatctgttaaaatctgcacaa 748
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agacctgcttcaattgtatagatggctctgattcttttagatctgttaaaatctgcacaa 296
Query: 749 cacgatcgtctacttccttcctatatac-acaggcatagcagtctgataattttcgagga 807
||||| |||||||||||| |||| | | ||||||| |||||||||||||| |||||||
Sbjct: 297 cacgagcgtctacttcctccctagaagcaacaggcaaggcagtctgataattctcgagga 356
Query: 808 tctttatctcattggcttcttttcttaaccaaaccttctctctttatttgtaacaaa 864
||||||||||||||||||| ||||| |||||| |||||||| |||||| |||||||
Sbjct: 357 tctttatctcattggcttc-tttctctaccaaatcttctctc-ttatttttaacaaa 411
>3x_Contig956
Length = 4347
Score = 426 bits (215), Expect = e-119
Identities = 224/227 (98%)
Strand = Plus / Plus
Query: 46 ttcagtcttttttaatcattacataccgacaccatcgttggttgatttgattgggggtta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 ttcagtcttttttaatcattacataccgacaccatcgttggttgatttgattgggggtta 4180
Query: 106 taagcacgtctaatgtttctcttctggatattttcgtacttgtaattgccattatttatc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 taagcacgtctaatgtttctcttctggatattttcgtacttgtaattgccattatttatc 4240
Query: 166 tctgaatttgaaatttagtcaattcatgttttcaatgtttggtgaaatttagaggaagta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4241 tctgaatttgaaatttagtcaattcatgttttcaatgtttggtgaaatttagaggaagta 4300
Query: 226 ctacaataaggtggaggaaggcagttgaagatgcatgcaagagttac 272
||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 4301 ctacaataaggaagaggaaggcagttgaagatacatgcaagagttac 4347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7829
Number of Sequences: 1807
Number of extensions: 7829
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)