BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE03RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1552 0.0
>3x_Contig1487
Length = 9002
Score = 1552 bits (783), Expect = 0.0
Identities = 842/854 (98%), Gaps = 6/854 (0%)
Strand = Plus / Plus
Query: 48 aggacctcactctcaatctgtggtaacaaaaaagtatcccagcaccgtcatattatgggg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 aggacctcactctcaatctgtggtaacaaaaaagtatcccagcaccgtcatattatgggg 1083
Query: 108 tccgataagagaccacagttgaagaaacagcagaccgaggatgagtccattttgagaggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 tccgataagagaccacagttgaagaaacagcagaccgaggatgagtccattttgagaggt 1143
Query: 168 cggggagcaacaaagaatccttctggatcatcaaatctcttcttcaggagttcatctgca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 cggggagcaacaaagaatccttctggatcatcaaatctcttcttcaggagttcatctgca 1203
Query: 228 tcaaatttatttcggcttcgaaaatcatttgctaatggaggctcgagcagtagtagtaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcaaatttatttcggcttcgaaaatcatttgctaatggaggctcgagcagtagtagtaat 1263
Query: 288 tctgctatggtattaaaatcaggacaatcgaagttgaagaacgaggacggtagtgaagtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 tctgctatggtattaaaatcaggacaatcgaagttgaagaacgaggacggtagtgaagtt 1323
Query: 348 tcggatactcatcatatgatcgatgttcttccctcgtttgaaatgtataatgctttacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 tcggatactcatcatatgatcgatgttcttccctcgtttgaaatgtataatgctttacat 1383
Query: 408 cgcaacatcccacgaggaaatgtaaaccctgaccagcatgatttaccccccagctatcta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 cgcaacatcccacgaggaaatgtaaaccctgaccagcatgatttaccccccagctatcta 1443
Query: 468 gaagtggagtcacagcggcaaacgcctgattcatctgacggtaccactgtctcccaactt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 gaagtggagtcacagcggcaaacgcctgattcatctgacggtaccactgtctcccaactt 1503
Query: 528 gatgaaatgttcctctccccatcgccttccttatacgatgccaacactcgcgttggatct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 gatgaaatgttcctctccccatcgccttccttatacgatgccaacactcgcgttggatct 1563
Query: 588 tcacagagccttcaaagcttgaatacagtatcctcaggggtgttacaaaacagtttacaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 tcacagagccttcaaagcttgaatacagtatcctcaggggtgttacaaaacagtttacaa 1623
Query: 648 gcgttgagtactagatatgatgcgataattgacgatttggatgatttcagat-atataaa 706
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct: 1624 gcgttgagtactagatatgaggcgataattgacgatttggatga-ttcagataatataaa 1682
Query: 707 gatcgagaagctatactcgttaccgatagtgtcatcacctattgacgttaatattcgaat 766
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 1683 gatcgagaagctatactcgttaccgaaggtgtcaacacctattgacgttaatattcgaat 1742
Query: 767 tcttatgaa-gctacgaaaccctgcgaagag-aacctgaggaagagtccata-taaagga 823
||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1743 tcttaagaaggctacgaaaccctgcgaagagaaacctgaggaagagtccatattaaagga 1802
Query: 824 gtatacttccggggatattatcaacggggtttgntgttatagagaatagatctcaacatc 883
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1803 gtatacttccggggatattatcaac-gggtttgttgttatagagaatagatctcaacatc 1861
Query: 884 cccttcgattcgaa 897
||||||||||||||
Sbjct: 1862 cccttcgattcgaa 1875
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5545
Number of Sequences: 1807
Number of extensions: 5545
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)