BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZE04FM1.SCF screened BAC_end
         (908 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1157                                                        1285   0.0  

>3x_Contig1157 
          Length = 4825

 Score = 1285 bits (648), Expect = 0.0
 Identities = 757/780 (97%), Gaps = 10/780 (1%)
 Strand = Plus / Minus

                                                                        
Query: 87   ttccgaatgtgtttgagccagtttggctgtggaaggcttcaaaggattcataaaagtatg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ttccgaatgtgtttgagccagtttggctgtggaaggcttcaaaggattcataaaagtatg 1886

                                                                        
Query: 147  agaaagcagtcttataatctttgtcttcacagtgtaagataccactcattaaatccaatt 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 agaaagcagtcttataatctttgtcttcacagtgtaagataccactcattaaatccaatt 1826

                                                                        
Query: 207  ctgccattgtcaatgttggacaataaatcgaatttgcggatgttctagcacttgtcaaag 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 ctgccattgtcaatgttggacaataaatcgaatttgcggatgttctagcacttgtcaaag 1766

                                                                        
Query: 267  cagcctttgatttagtcaaatttcttaatttatggtacactttacattccaatagatgaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 cagcctttgatttagtcaaatttcttaatttatggtacactttacattccaatagatgaa 1706

                                                                        
Query: 327  cttcgagcaaagacgatttatcgtccaatttcttaaactgcctcaacaaatcattgatca 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 cttcgagcaaagacgatttatcgtccaatttcttaaactgcctcaacaaatcattgatca 1646

                                                                        
Query: 387  attgcaaggattcgttgtaatgcgtcttttggtagtaaagagttgccaacctaatcgata 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 attgcaaggattcgttgtaatgcgtcttttggtagtaaagagttgccaacctaatcgata 1586

                                                                        
Query: 447  gagaatgctttaaaaagattctcttctcctttgtggcaaagtcgatcgaatcttcgcata 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 gagaatgctttaaaaagattctcttctcctttgtggcaaagtcgatcgaatcttcgcata 1526

                                                                        
Query: 507  tctcgatttgggtatccaaggaatcgggtatcaattcgaaatcgttaagtaacgtcttta 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 tctcgatttgggtatccaaggaatcgggtatcaattcgaaatcgttaagtaacgtcttta 1466

                                                                        
Query: 567  aaactttggcaatctttgatttcgctactttcatcatgtattcacgagagcgtggtacaa 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 aaactttggcaatctttgatttcgctactttcatcatgtattcacgagagcgtggtacaa 1406

                                                                        
Query: 627  actcggcgagtttcttcaactgatgtgtggtaccatacaattgacctagctaaag-atac 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1405 actcggcgagtttcttcaactgatgtgtggtaccatacaattgacctagctcaagaatac 1346

                                                                        
Query: 686  attgttccttttc-tgagcatctttattgctaattgattggggttgtgccggatcttgat 744
            ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 1345 attgttccttttcttgagcatctttattgctaattgattggggttgtgcggcatcttgat 1286

                                                                        
Query: 745  gg-tcaatactg-tttgaaacgggctttaaccttcttataa-cttcctt-cctacaagat 800
            || ||||||||| |  |||  | |||| | |||||| |||| ||||||| ||||||||||
Sbjct: 1285 ggttcaatactgctaagaactgcgcttcagccttctcataatcttccttccctacaagat 1226

                                                                        
Query: 801  ttttagcttcttccaacgacttat-taa-tggga-tatttgc-ttctttcctgttccttt 856
            || ||||||||||||||||| ||| ||| ||||| ||||||| |||||||||||||||||
Sbjct: 1225 ttctagcttcttccaacgacatatctaagtgggattatttgctttctttcctgttccttt 1166


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6418
Number of Sequences: 1807
Number of extensions: 6418
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)