BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE04RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig421 1409 0.0
>3x_Contig421
Length = 2105
Score = 1409 bits (711), Expect = 0.0
Identities = 805/834 (96%), Gaps = 2/834 (0%)
Strand = Plus / Minus
Query: 49 aagcttttaaaaagtcttcatattttatgaataaaccttgaagctgttccgctgtcaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 aagcttttaaaaagtcttcatattttatgaataaaccttgaagctgttccgctgtcaaag 1307
Query: 109 cgtctgggaagttatctataaagcgctgaataatggagagtggaagaggatcaatcatat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 cgtctgggaagttatctataaagcgctgaataatggagagtggaagaggatcaatcatat 1247
Query: 169 ttgctgtgttctttaattgggtttctgcatctatatcgatatccatgtcaacatcattgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 ttgctgtgttctttaattgggtttctgcatctatatcgatatccatgtcaacatcattgg 1187
Query: 229 atccagcatagttttgaaatattcttttgattgcgcatgttcctgcagcagttattaaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 atccagcatagttttgaaatattcttttgattgcgcatgttcctgcagcagttattaaag 1127
Query: 289 ctttcaaatctgctcctacgaatcctggtgtaagctttgctagtttgataaaatcaattt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ctttcaaatctgctcctacgaatcctggtgtaagctttgctagtttgataaaatcaattt 1067
Query: 349 cgccgtcgatctttaaactggaggccattttcttcaagataaagtacctagatgtctcat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cgccgtcgatctttaaactggaggccattttcttcaagataaagtacctagatgtctcat 1007
Query: 409 ttggcacattgaggcatatttctctgtcaaatctgccagccctccttagtgctgcatcca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ttggcacattgaggcatatttctctgtcaaatctgccagccctccttagtgctgcatcca 947
Query: 469 aagaatcaggtctgtttgttgcacctattacaatcactggtttgccctccattttctc-a 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 946 aagaatcaggtctgtttgttgcacctattacaatcactggtttgccctccattttctcaa 887
Query: 528 atgacaattcatccatagatgtcaataactggggcacatttcttctttccatttcccttt 587
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 886 atgacaattcatccatagatgtcaataactgggcaacaattcttctttccatttcccttt 827
Query: 588 gagcaccaccatctcgtttgggagtaatggcgtcgatttcgtcaaaaaatactangcatg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 826 gagcaccaccatctcgtttgggagtaatggcgtcgatttcgtcaaaaaatactaggcatg 767
Query: 648 ttgctaatgattttgcttcatcggatagctctcgaatctttttctcactttcttcagaca 707
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 766 gtgctaatgattttgcttcatcgaatagctctcgaatctttttctcactttctccagaca 707
Query: 708 ttccgctcactaccgatggagcagattttgaaataaagggtacctggcactcaccagcta 767
| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 706 tcccgctcactaccgatggagcagatatggaaataaagggtacctgcaactcaccagcta 647
Query: 768 agccatttgctattgatgtcctaccacaccctgttgggccctgccagaatacaccctttg 827
|| ||||||||||||||||| |||||||||||| |||||| ||| ||| |||| ||| |
Sbjct: 646 aggcatttgctattgatgtcttaccacaccctggtgggccatgcaagagtaca-cctcta 588
Query: 828 gggggttcacttccggtggcagaatatattcccggatgtaatattgggaatcca 881
|| |||||| ||||||||||||||||||| | ||||||||||| || ||||||
Sbjct: 587 ggtggttcaactccggtggcagaatatatttctggatgtaatatcggtaatcca 534
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6846
Number of Sequences: 1807
Number of extensions: 6846
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)