BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE06RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 1463 0.0
>3x_Contig1400
Length = 8536
Score = 1463 bits (738), Expect = 0.0
Identities = 818/841 (97%), Gaps = 3/841 (0%)
Strand = Plus / Minus
Query: 45 taacaatttcaactatgtacctgttggcctaagtatcgaatggcattgattgtctggtcg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 taacaatttcaactatgtacctgttggcctaagtatcgaatggcattgattgtctggtcg 4454
Query: 105 tctccataacaagaattcaaaatgaaaattgaaaaaaaattaaaatatatgaaaacacga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 tctccataacaagaattcaaaatgaaaattgaaaaaaaattaaaatatatgaaaacacga 4394
Query: 165 attcataacgttacaatcaagattttgccaactgatatcagtattatatccaacaatacg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4393 attcataacgttacaatcaagattttgccaactgatatcagtattatatccaacaatacg 4334
Query: 225 ccatcaagtacccgagagatgtcaaaaagaggttttggtatgtttaatttatgtcaccat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 ccatcaagtacccgagagatgtcaaaaagaggttttggtatgtttaatttatgtcaccat 4274
Query: 285 tcaagacgttagagttttgcattgttttttgaaggttctatccatctctgacgtattgtt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 tcaagacgttagagttttgcattgttttttgaaggttctatccatctctgacgtattgtt 4214
Query: 345 atatcagatttaagttttcccttagtacaactgacagcgacgtcagcaaagagagacaga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4213 atatcagatttaagttttcccttagtacaactgacagcgacgtcagcaaagagagacaga 4154
Query: 405 tgacagacggttccaagattgccacaaaacacacatctagactagagagacatcccatcg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4153 tgacagacggttccaagattgccacaaaacacacatctagactagagagacatcccatcg 4094
Query: 465 acaatcggtataaatacttcaagttttcggtatgatttactctgaataatatcgaagaag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4093 acaatcggtataaatacttcaagttttcggtatgatttactctgaataatatcgaagaag 4034
Query: 525 tttcgttaaaagtagtcggttggttgacactttggtttagaactcagagagaaagcaata 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4033 tttcgttaaaagtagtcggttggttgacactttggtttagaactcagagagaaagcaata 3974
Query: 585 gtatcagatatatatctgagacttacattaacgtnttccaaggaaaagcatataattact 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3973 gtatcagatatatatctgagacttacattaacgttttccaaggaaaagcatataattact 3914
Query: 645 aacaactgtttctgaaacacaatgatntcttgtagattatgaaagagagagtggttatcg 704
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 3913 aacaactgtttctgaaacacaatgat-tcttgtagattatgaagaagagagtggttatcg 3855
Query: 705 tgaagcgaagccacattttgtcaaaaagcataagctgccacccgttgtcatgcttttgta 764
|||||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||| |
Sbjct: 3854 tgaagcgaggccacattttgccaaaaggcaaaggctgccacccgttgtcatgctttgtaa 3795
Query: 765 ggacatgattgcctgatatcaggaccatgggtgaatccgccaaggcttttccagaagatt 824
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3794 ggacatga-tgcctgatatcaggaccatgggtgaatcggccaaggcttttccagaagata 3736
Query: 825 tcaagttccttaatgaaggcattgttcatgaattccggtaatgacgaattttttaacaac 884
|||||||||| | ||| | ||||||||||||||| |||||||||||| | ||| ||||||
Sbjct: 3735 tcaagttcctaagtgaggccattgttcatgaatt-cggtaatgacgagtatttcaacaac 3677
Query: 885 g 885
|
Sbjct: 3676 g 3676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7510
Number of Sequences: 1807
Number of extensions: 7510
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)