BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE07FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1292 0.0
>3x_Contig1536
Length = 11572
Score = 1292 bits (652), Expect = 0.0
Identities = 779/806 (96%), Gaps = 12/806 (1%)
Strand = Plus / Minus
Query: 87 cttattagcttctgatacttcctgcaatgtagatcctggaacgacgctccaatctatcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6235 cttattagcttctgatacttcctgcaatgtagatcctggaacgacgctccaatctatcat 6176
Query: 147 tggttctttgttctcaaataagtaatcgtttataatcttgaaatgtttattgccgaagaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175 tggttctttgttctcaaataagtaatcgtttataatcttgaaatgtttattgccgaagaa 6116
Query: 207 ccctcttgacgcagacagcggcgatggatgtacagactttagaactttgaaattcgatgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6115 ccctcttgacgcagacagcggcgatggatgtacagactttagaactttgaaattcgatgg 6056
Query: 267 caagtgccttttttccccttcaatcagcttgatagcattgttgccccaaagtaggaaaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6055 caagtgccttttttccccttcaatcagcttgatagcattgttgccccaaagtaggaaaac 5996
Query: 327 gattggtttaccgtttttcattctgtcttcaattagtagatcaatggctcttttagtgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 gattggtttaccgtttttcattctgtcttcaattagtagatcaatggctcttttagtgaa 5936
Query: 387 ttgttcccaacctctcttggagtgagaattagcagagtgtgctttgactgttaaactggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 ttgttcccaacctctcttggagtgagaattagcagagtgtgctttgactgttaaactggt 5876
Query: 447 attaagtaataagacaccttgcttactccacgatgaaagatctccatatgaataattaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 attaagtaataagacaccttgcttactccacgatgaaagatctccatatgaataattaac 5816
Query: 507 tttgaaatcggagtaattgttcaattgtaattctttgtatatattcttaagagacggagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 tttgaaatcggagtaattgttcaattgtaattctttgtatatattcttaagagacggagg 5756
Query: 567 agctggcgtcgggcttcgtacgctaaaagccaatccatgagcttggttaaaattatgata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755 agctggcgtcgggcttcgtacgctaaaagccaatccatgagcttggttaaaattatgata 5696
Query: 627 nggatcctggccaaatatcacaactcgaacatcatcgaaatgcgttaagcgagtccacga 686
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5695 gggatcctggccaataatcacaactcgaacatcatcgaaatgcgttaagcgagtccacga 5636
Query: 687 gtagatatcctttcgtgatgggaaa-ccgtgcaatttttctgt-cgttcaca-caaattc 743
|||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 5635 gtagatatccttcggtgatgggaaaaccgtgcaatttttctgttcgttcacaacaaattc 5576
Query: 744 cttcagtttaaggaattacg-tttcnagaactcttgctttaac-gtcttcaccaggaaat 801
||||||||||||||| |||| |||| ||||||||||||||||| |||| |||||||||
Sbjct: 5575 cttcagtttaaggaaatacggtttcgagaactcttgctttaaccgtctcagccaggaaat 5516
Query: 802 ggca-ttgtatcc-tttctaaatcca-taaacactttttttcctcag-tacaa-ctgtaa 856
| || |||| ||| ||||| | |||| ||||||||| |||||||||| ||||| ||||||
Sbjct: 5515 gtcaattgtctccatttctcactccagtaaacacttcttttcctcaggtacaaactgtaa 5456
Query: 857 a-tagcgttcttc-acttattcttat 880
| ||||||||||| ||||||||||||
Sbjct: 5455 aatagcgttcttcaacttattcttat 5430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6184
Number of Sequences: 1807
Number of extensions: 6184
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)