BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE07RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1478 1354 0.0
>3x_Contig1478
Length = 9651
Score = 1354 bits (683), Expect = 0.0
Identities = 747/763 (97%), Gaps = 6/763 (0%)
Strand = Plus / Minus
Query: 44 gcttcgtgatttcagtacctttcattctctgcatagttatgatgttctctgtcgtcagtt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8651 gcttcgtgatttcagtacctttcattctctgcatagttatgatgttctctgtcgtcagtt 8592
Query: 104 catcatatacaaacggtacctcgaaaacagggtcgtctttcaacaaactagcaaaatgct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8591 catcatatacaaacggtacctcgaaaacagggtcgtctttcaacaaactagcaaaatgct 8532
Query: 164 tcaatgcattagcctctctatgataatcacattcccactttaattctttacgagcattat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8531 tcaatgcattagcctctctatgataatcacattcccactttaattctttacgagcattat 8472
Query: 224 caatggttttatccaaaaacaatccctttggtaataaactggaagcagttaataacataa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8471 caatggttttatccaaaaacaatccctttggtaataaactggaagcagttaataacataa 8412
Query: 284 gaagattgtttaggtcgctgtcaatagagtctttgactcctggatattgtatcttcacga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8411 gaagattgtttaggtcgctgtcaatagagtctttgactcctggatattgtatcttcacga 8352
Query: 344 cacattcctcgccgttgtgcaaaacagcattatgaacttgaccaatgcttgctgcagcga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8351 cacattcctcgccgttgtgcaaaacagcattatgaacttgaccaatgcttgctgcagcga 8292
Query: 404 taggagtcctgtcgaaactcttgaatttcttttcccaatcagaactcaattctctagcca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8291 taggagtcctgtcgaaactcttgaatttcttttcccaatcagaactcaattctctagcca 8232
Query: 464 gtagcctgtccaactgtcttggaggcatataattagcactgttctgaactcttgaaagta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8231 gtagcctgtccaactgtcttggaggcatataattagcactgttctgaactcttgaaagta 8172
Query: 524 tcgtgtataattgcggaggtaaaaccttctcatcctggaatgacattagttggcccaact 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8171 tcgtgtataattgcggaggtaaaaccttctcatcctggaatgacattagttggcccaact 8112
Query: 584 ntaatgctgctcctctcatttgagagaatttatttgcaatccttttcacattagaatctg 643
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8111 ttaatgctgctcctctcatttgagagaatttatttgcaatcctttcaacattagaatctg 8052
Query: 644 anntacagt-aatctttaaaacttgatgattggccacgactcagctgagtgatactttga 702
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8051 ata-acagtaaatctttaaaacttgatgattggccacgactcagctgagtgatactttga 7993
Query: 703 gatgcagcagaaattcccacactagcagctaggtgggncggtatgaaaaaagccgagaga 762
|||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 7992 gatgcagcagaaatacccacactagcagctaggtgg--ccgtaatgaaaaagccgagaga 7935
Query: 763 tacgtggatgaagggacttcttgaactttccagtttattagcc 805
||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 7934 tacgt-gatgaagggacttc-tgaactttccagtttattagcc 7894
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7262
Number of Sequences: 1807
Number of extensions: 7262
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)