BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE08RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1368 0.0
>3x_Contig1803
Length = 52241
Score = 1368 bits (690), Expect = 0.0
Identities = 774/794 (97%), Gaps = 6/794 (0%)
Strand = Plus / Minus
Query: 48 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48818 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 48759
Query: 108 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48758 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 48699
Query: 168 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattattgtccttta 227
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 48698 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 48639
Query: 228 ccaactatagacagatgggtactctcacc-tcacctacggtttactgcaaattagagcat 286
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 48638 ccaactatagacagatgggtactctcaccctcacctacggtttactgcaaattagagcat 48579
Query: 287 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48578 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 48519
Query: 347 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48518 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 48459
Query: 407 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48458 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 48399
Query: 467 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48398 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 48339
Query: 527 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48338 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 48279
Query: 587 aacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaacaaca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48278 aacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaacaaca 48219
Query: 647 gctatttggagtccatgggtgctcaatttcacgaatttattatcataccttcattgtgag 706
|||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 48218 gcta-ttggagtccat-ggtgctcaattccacgaatttattatcatacctccattgtgag 48161
Query: 707 tgtgagccacatattatgatcactagacattaattattttattatttattaaccagtttt 766
||||||| |||||||||||||||||||||||||||| |||| || |||||||| ||||
Sbjct: 48160 tgtgagcaacatattatgatcactagacattaatta-tttaataattattaacagttttt 48102
Query: 767 aagtggagattctttcttatggcttcttttctaaattttggtttgaacattttnttctgg 826
|||||||| |||||||||||| |||||||||||||||||| || |||||| || ||||||
Sbjct: 48101 aagtggag-ttctttcttatgtcttcttttctaaattttgtttcgaacatctt-ttctgg 48044
Query: 827 tgatttaacacaag 840
||||||||||||||
Sbjct: 48043 tgatttaacacaag 48030
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6401
Number of Sequences: 1807
Number of extensions: 6401
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)