BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZE09FM1.SCF screened BAC_end
         (886 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig994                                                         1507   0.0  

>3x_Contig994 
          Length = 4780

 Score = 1507 bits (760), Expect = 0.0
 Identities = 793/802 (98%), Gaps = 2/802 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tatacacaatgctatagccagcacttatctggagaagtcattgggggaaatttcgtatac 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 tatacacaatgctatagccagcacttatctggagaagtcattgggggaaatttcgtatac 2559

                                                                        
Query: 146  taccagacaggctgtggtacaaacatataataataccgcattagtttcgggcatatgtat 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2560 taccagacaggctgtggtacaaacatataataataccgcattagtttcgggcatatgtat 2619

                                                                        
Query: 206  gtaatccatactttgaaccattgggtacttgataacaagtctacattcgttgcaagtgtg 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2620 gtaatccatactttgaaccattgggtacttgataacaagtctacattcgttgcaagtgtg 2679

                                                                        
Query: 266  atggaagtctgagttattttgtgtgaatcttctgttagtttcacaaaacgtcgatctctc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 atggaagtctgagttattttgtgtgaatcttctgttagtttcacaaaacgtcgatctctc 2739

                                                                        
Query: 326  ttcgtcatcactatcgtcacatatatcctgaattcgaaggatatttaaaatcttctcaaa 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 ttcgtcatcactatcgtcacatatatcctgaattcgaaggatatttaaaatcttctcaaa 2799

                                                                        
Query: 386  tctgaaagcataaatgccacgccactcggttaatcgataaagaaacattagtccagagcc 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 tctgaaagcataaatgccacgccactcggttaatcgataaagaaacattagtccagagcc 2859

                                                                        
Query: 446  atttgcaaccacaatgcaatttatttcgcgtaagtgacaaaccattattttgttgcttga 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 atttgcaaccacaatgcaatttatttcgcgtaagtgacaaaccattattttgttgcttga 2919

                                                                        
Query: 506  gagatcaacacagttgaaattcaagggaaatatcggcctagtaaatgcattcatgataat 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 gagatcaacacagttgaaattcaagggaaatatcggcctagtaaatgcattcatgataat 2979

                                                                        
Query: 566  tggatctgttccaagcaaactggtctcaaaagtcgaagtagcctcaaatatgaaattact 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 tggatctgttccaagcaaactggtctcaaaagtcgaagtagcctcaaatatgaaattact 3039

                                                                        
Query: 626  tcctgatgtctttgaaaaaaactttggaccatcgttattaaatcttgattcatcgcanat 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3040 tcctgatgtctttgaaaaaaactttggaccatcgttattaaatcttgattcatcgcaaat 3099

                                                                        
Query: 686  ccgaagatatttaattatcgatttatccacgtattcatcaacagcatctttatcaatgcg 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 ccgaagatatttaattatcgatttatccacgtattcatcaacagcatctttatcaatgcg 3159

                                                                        
Query: 746  attcagtatagggatatctagttgtctagcggtgaaacaatc-ttgatattagaaggaga 804
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3160 attcagtatagggatatctagttgtctagcggtgaaacaatctttaatattagaaggaga 3219

                                                                        
Query: 805  aaattcttcacttttcaattctgaggatttaatttgagtaaatttccaggtctgttggaa 864
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 3220 aaattctccacttttcaattctgaggatttaatttgagtaaatttccaggtcttgtggaa 3279

                                  
Query: 865  gtagat-cctctnaataaatca 885
            |||||| | ||| |||||||||
Sbjct: 3280 gtagatacgtctcaataaatca 3301


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6529
Number of Sequences: 1807
Number of extensions: 6529
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)