BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE09RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1441 1479 0.0
>3x_Contig1441
Length = 8574
Score = 1479 bits (746), Expect = 0.0
Identities = 815/832 (97%), Gaps = 5/832 (0%)
Strand = Plus / Minus
Query: 49 tgccaattcacataaatattgaacacttacagtaaaactctcacttgaacaatagccagc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8111 tgccaattcacataaatattgaacacttacagtaaaactctcacttgaacaatagccagc 8052
Query: 109 agaacttcggtcatcatacaaagccaaataaccagaaccaacattctgccttaacaatga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8051 agaacttcggtcatcatacaaagccaaataaccagaaccaacattctgccttaacaatga 7992
Query: 169 taaaatgcgacttttaacaacattcaacgacaactttaagcaaaagaattcatttaactt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7991 taaaatgcgacttttaacaacattcaacgacaactttaagcaaaagaattcatttaactt 7932
Query: 229 aaaaagcgaaagagtttcacagatcttaagtgaagacgtttgaacaccatcaaatggtga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7931 aaaaagcgaaagagtttcacagatcttaagtgaagacgtttgaacaccatcaaatggtga 7872
Query: 289 aaactgtaacgctaaaataataccctttaaaagacttctcttactgtcgtcaaaacccaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7871 aaactgtaacgctaaaataataccctttaaaagacttctcttactgtcgtcaaaacccaa 7812
Query: 349 aacaccaggacctaacatcgccaccaatgcagagacaataaaacaaattactatcccagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7811 aacaccaggacctaacatcgccaccaatgcagagacaataaaacaaattactatcccagg 7752
Query: 409 attaaacttctgacaataattgttaccaaaagacaaggtactgaatggtccataattatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7751 attaaacttctgacaataattgttaccaaaagacaaggtactgaatggtccataattatt 7692
Query: 469 acaaaacaaattaacagatatcagctccaacaactcccctgccaaacgaatgtcacaaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7691 acaaaacaaattaacagatatcagctccaacaactcccctgccaaacgaatgtcacaaat 7632
Query: 529 attatgctttttcaacaaaacaaacaaacatttcaggccactaacattaataacaggatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7631 attatgctttttcaacaaaacaaacaaacatttcaggccactaacattaataacaggatg 7572
Query: 589 aggatcgctaatgaacttttttacaatatctaacacaacagcaaattcactacatccagg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7571 aggatcgctaatgaacttttttacaatatctaacacaacagcaaattcactacatccagg 7512
Query: 649 atcctcgttcaaaatattacaaatgatgaaaagattcaacccacgagatataggattgac 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7511 atcctcgttcaaaatattacaaatgatgaaaagattcaacccacgagatataggattgac 7452
Query: 709 atcacttacaatcctctgaattgacacattgattaaacttttcgaaaac-tttcatctnc 767
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 7451 atcacttacaatcctctgaattgacacattgattaaacttttcgaaaacttttcatctcc 7392
Query: 768 agtaccgtttactgcagcacatacataa-caaaacagcgtncctttcaatcatat-aaat 825
||||| || ||||||||||| ||| || ||||||||||| | || |||||||| ||||
Sbjct: 7391 agtacgtttaactgcagcacaaacaaaaccaaaacagcgtcctttcaaatcatataaaat 7332
Query: 826 atcatcatcagaaaaag-acactcgtcc-acacatttattattagcttacca 875
||||||||||||||||| |||||||||| ||||||| |||||||||| ||||
Sbjct: 7331 atcatcatcagaaaaagaacactcgtccaacacattaattattagctcacca 7280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7590
Number of Sequences: 1807
Number of extensions: 7590
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)