BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE10RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1674 1298 0.0
>3x_Contig1674
Length = 12281
Score = 1298 bits (655), Expect = 0.0
Identities = 716/729 (98%), Gaps = 7/729 (0%)
Strand = Plus / Plus
Query: 48 tttctgcaattcatgcagctcatcttgcatggagaaaccccactatctgaagcaattcaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tttctgcaattcatgcagctcatcttgcatggagaaaccccactatctgaagcaattcaa 1040
Query: 108 ggttgaagaaccactgtttggaacatacacacataacagcgtaaagaaataagtcacgaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ggttgaagaaccactgtttggaacatacacacataacagcgtaaagaaataagtcacgaa 1100
Query: 168 tgtctcaggcattgcagtactcgagtcgggtattgaagcgatactcgtttctgaagacag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tgtctcaggcattgcagtactcgagtcgggtattgaagcgatactcgtttctgaagacag 1160
Query: 228 ataagaactttattcgagctgcattacaatcaccaaatgcacagttcttaccataccatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 ataagaactttattcgagctgcattacaatcaccaaatgcacagttcttaccataccatg 1220
Query: 288 actactatccattttgtcataaatctgatatgagcaagctatggaagttcgatagatcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 actactatccattttgtcataaatctgatatgagcaagctatggaagttcgatagatcca 1280
Query: 348 atgtctcacatcaacctatactaaatacgttccttaaccagcataagccgagagagttgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 atgtctcacatcaacctatactaaatacgttccttaaccagcataagccgagagagttgg 1340
Query: 408 tgtacatgggattagtcccagcaaatactgcatctaatgagtccactttcaggtataaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 tgtacatgggattagtcccagcaaatactgcatctaatgagtccactttcaggtataaga 1400
Query: 468 agtgtgagggtacgcccttgtttgcaattgacgtaacacaccacgagcatgtgatcctga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 agtgtgagggtacgcccttgtttgcaattgacgtaacacaccacgagcatgtgatcctga 1460
Query: 528 caacaacgaagtcattaaatgccaggattttcgacatttcaatgatttggctgtagacga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 caacaacgaagtcattaaatgccaggattttcgacatttcaatgatttggctgtagacga 1520
Query: 588 atcgtcattattatctttagggaaaatgatgctacactggcttggaactcatanatattg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1521 atcgtcattattatctttagggaaaatgatgctacactggcttggaactcataaatattg 1580
Query: 648 gtccatgtgtggtcatgaaaatgaagtcattgcgtgttgttgggtcaattacatttgtac 707
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 1581 ttccatgtgtggtcatgaaaatgaagtcattgcgtgtggt--ggtcaattaca-ttgtac 1637
Query: 708 caatcaatccttgttcctccgatggggaggatcagtaacgttttcctttccaagaacaag 767
|||||||| ||||||||| ||| |||||||||||||||| ||||||| |||||||| ||
Sbjct: 1638 caatcaat-cttgttcct-cgaatgggaggatcagtaacg-tttccttcccaagaac-ag 1693
Query: 768 acccagtag 776
|||||||||
Sbjct: 1694 acccagtag 1702
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5540
Number of Sequences: 1807
Number of extensions: 5540
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)