BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE11FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1215 1425 0.0
>3x_Contig1215
Length = 7125
Score = 1425 bits (719), Expect = 0.0
Identities = 789/802 (98%), Gaps = 9/802 (1%)
Strand = Plus / Plus
Query: 88 accacttcaaaaaatgtatcgacaagaaatgactcgtgataatgtggctgttgatccggt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4616 accacttcaaaaaatgtatcgacaagaaatgactcgtgataatgtggctgttgatccggt 4675
Query: 148 cacaattgtcatcaaggaatgtatttctttgtcgacttctatgaggaagtacgcgaaata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4676 cacaattgtcatcaaggaatgtatttctttgtcgacttctatgaggaagtacgcgaaata 4735
Query: 208 ttcggtgcaatctggtgttgcagccttgttaggggggggaagtgatatattcataaatca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4736 ttcggtgcaatctggtgttgcagccttgttaggggggggaagtgatatattcataaatca 4795
Query: 268 ggacgcttcattggcaggtactttcaataatttagcagctagtaagactaaggatccact 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4796 ggacgcttcattggcaggtactttcaataatttagcagctagtaagactaaggatccact 4855
Query: 328 actgtcggggttaattcagttgagattgatgttaaatcataaagataatttagaagatgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4856 actgtcggggttaattcagttgagattgatgttaaatcataaagataatttagaagatgt 4915
Query: 388 tgatgcgctaactgtcttgcaacctttcttattggtgataagcacagcttcaacgtcagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4916 tgatgcgctaactgtcttgcaacctttcttattggtgataagcacagcttcaacgtcagg 4975
Query: 448 atatattacatcattggccttagactcattacaaaagtttttcgcctttggtattattaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4976 atatattacatcattggccttagactcattacaaaagtttttcgcctttggtattattaa 5035
Query: 508 cgaatcttcgaaaaaccatgtcgcagcttatagacaaacgatcaactctttaacccactg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5036 cgaatcttcgaaaaaccatgtcgcagcttatagacaaacgatcaactctttaacccactg 5095
Query: 568 taaatttgaaggtactgaacatttatccgatgattctgtccttttaaaggtattggttct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5096 taaatttgaaggtactgaacatttatccgatgattctgtccttttaaaggtattggttct 5155
Query: 628 tattgaatcaattattgcttctccttcaggtgagattctttccgactcatgtgtgtacga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 tattgaatcaattattgcttctccttcaggtgagattctttccgactcatgtgtgtacga 5215
Query: 688 tgtgttacaaactgtcatgttcttggcttgtaacaaaagaagaactgatgtgtttgagaa 747
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 5216 tgtgttacaaactgtcatgtccttggcttgtaacaaaagaagaactgatgtg-ttgagaa 5274
Query: 748 aggcagcaggaaatgagcatgctatncgattaccgtcaaagatatttgacaagtttgaaa 807
|||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 5275 aggcagca-gaaatgagcatgctat-cgattaccgtc-aagatatttgacaagtt--gaa 5329
Query: 808 aaagttagactcaagcaaacaacacatttttcattaacgatcagngacttctcggagaac 867
|||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||
Sbjct: 5330 aaagttagactcaagcaaacaacaca-tcttcattaacgatcag-gacttctcgaagaac 5387
Query: 868 gtttttgaaagatgacaacata 889
| ||||||||||||||||||||
Sbjct: 5388 g-ttttgaaagatgacaacata 5408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6709
Number of Sequences: 1807
Number of extensions: 6709
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)