BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE11RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig487 1217 0.0
>3x_Contig487
Length = 1564
Score = 1217 bits (614), Expect = 0.0
Identities = 621/622 (99%), Gaps = 1/622 (0%)
Strand = Plus / Minus
Query: 46 ctttcttactgtttcagaaccattaggtaatccttcccttcgcgtttccagggaacgggt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctttcttactgtttcagaaccattaggtaatccttcccttcgcgtttccagggaacgggt 563
Query: 106 gggacgttgtgctcgagtcaaaggagtgtttgccccaggttttctgtacaattgacttaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gggacgttgtgctcgagtcaaaggagtgtttgccccaggttttctgtacaattgacttaa 503
Query: 166 ggataccactttttttttcttgtttcggttcgtgttgtcacttccgcttttacctttaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggataccactttttttttcttgtttcggttcgtgttgtcacttccgcttttacctttaac 443
Query: 226 aatcatataaaggaagttcgattaacggttggtgatttcgtttgacattttaaattccac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatcatataaaggaagttcgattaacggttggtgatttcgtttgacattttaaattccac 383
Query: 286 gttaggggaaaattaatccggtttaagtttggtttacattttcattgtttgttatttgtt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttaggggaaaattaatccggtttaagtttggtttacattttcattgtttgttatttgtt 323
Query: 346 atttggattttcgtgatggataaggataatttgaatatcaatttacaggattggttgaat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atttggattttcgtgatggataaggataatttgaatatcaatttacaggattggttgaat 263
Query: 406 gatccgatgttggcagctcagctgaatcgagctcaatcttcaacgccgacaattttcaat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatccgatgttggcagctcagctgaatcgagctcaatcttcaacgccgacaattttcaat 203
Query: 466 ggtatggatgatacagcgaacggatcttctgttgtacaacagaaaagcgatccgacaaaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtatggatgatacagcgaacggatcttctgttgtacaacagaaaagcgatccgacaaaa 143
Query: 526 acgcaacttcagtctgtcgacaatgcttcggcatcagaattatctaactttctaatgaac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 acgcaacttcagtctgtcgacaatgcttcggcatcagaattatctaactttctaatgaac 83
Query: 586 tctcggcttaatttggggacgttgatgaaatttgtgtgtatagaattcttcaaatgtaat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tctcggcttaatttggggacgttgatgaaatttgtgtgtatagaattcttcaaatgtaat 23
Query: 646 aaggacgaattggccaatctta 667
||||||||||| ||||||||||
Sbjct: 22 aaggacgaatt-gccaatctta 2
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8348
Number of Sequences: 1807
Number of extensions: 8348
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)