BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE12FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1580 0.0
>3x_Contig1448
Length = 10333
Score = 1580 bits (797), Expect = 0.0
Identities = 820/825 (99%), Gaps = 2/825 (0%)
Strand = Plus / Plus
Query: 82 cgcgaatgcgatgaacgcacctttgacaaagttttgggccataataacgcaggaccaata 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8225 cgcgaatgcgatgaacgcacctttgacaaagttttgggccataataacgcaggaccaata 8284
Query: 142 ataataattggcggaaaacatagtatagaagaaaccgtatttgttcaagaccctctggtc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8285 ataataattggcggaaaacatagtatagaagaaaccgtatttgttcaagaccctctggtc 8344
Query: 202 accatataaaatagcagctggattgttgtgtaactgaatagatcgtttagcaaaagaaat 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8345 accatataaaatagcagctggattgttgtgtaactgaatagatcgtttagcaaaagaaat 8404
Query: 262 tgttctgagtgacacataaccgaggataccataaaccataatgatgaatagacaactcaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8405 tgttctgagtgacacataaccgaggataccataaaccataatgatgaatagacaactcaa 8464
Query: 322 tacaatgagagccggcgaatctctttgaataaattcccagaaacataaaatagtaatttg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8465 tacaatgagagccggcgaatctctttgaataaattcccagaaacataaaatagtaatttg 8524
Query: 382 aatgaaaccaatgtaaatgtaacgcagaagagcacccttcaatatgatcttccaatgctt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8525 aatgaaaccaatgtaaatgtaacgcagaagagcacccttcaatatgatcttccaatgctt 8584
Query: 442 tctgaaatcgatgaacctcgagtttttcaaccatccggctctgatacatagttcgacgac 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8585 tctgaaatcgatgaacctcgagtttttcaaccatccggctctgatacatagttcgacgac 8644
Query: 502 atatttggcgcaaatgatcaacccaaataggaaatacccacataatataaagaatgttaa 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8645 atatttggcgcaaatgatcaacccaaataggaaatacccacataatataaagaatgttaa 8704
Query: 562 cccagtagcaacgatagaagtaatttcgatgttggcactgtaacctaaacgtttaatacc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8705 cccagtagcaacgatagaagtaatttcgatgttggcactgtaacctaaacgtttaatacc 8764
Query: 622 tctgaagattagaacgttggaattaccatacaagacttctgccgcacgcttatagatgcg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8765 tctgaagattagaacgttggaattaccatacaagacttctgccgcacgcttatagatgcg 8824
Query: 682 ggtactttccagatattctagggatctttgaaccaaaacagaaattgtctttgaggttaa 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8825 ggtactttccagatattctagggatctttgaaccaaaacagaaattgtctttgaggttaa 8884
Query: 742 gtatagagtcggagtgccaccagtggcttgaacataccatctgaaaattttttgcatgaa 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8885 gtatagagtcggagtgccaccagtggcttgaacataccatctgaaaattttttgcatgaa 8944
Query: 802 agtgacacgggatcaatcccatggaccacatcaagtttttcgaaccaagcagcggcgata 861
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 8945 agtgacac-ggatcaatcccatggaccacatcaag-ttttcggaccaagcagcggcgata 9002
Query: 862 gggagcacagtgttaacatgttccatggcgaacacagtcaccgat 906
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9003 ggaggcacagtgttaacatgttccatggcgaacacagtcaccgat 9047
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6386
Number of Sequences: 1807
Number of extensions: 6386
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)