BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZE12RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1598 0.0
>3x_Contig1536
Length = 11572
Score = 1598 bits (806), Expect = 0.0
Identities = 843/852 (98%), Gaps = 3/852 (0%)
Strand = Plus / Plus
Query: 50 tatcctctttcctggagtggaagaagaatacttaatatgttcaaaagtacaaaaattcgg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7280 tatcctctttcctggagtggaagaagaatacttaatatgttcaaaagtacaaaaattcgg 7339
Query: 110 ctataatccactaccagaaattgggcaaagtatagaatctgctgttcttctgtactttcc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7340 ctataatccactaccagaaattgggcaaagtatagaatctgctgttcttctgtactttcc 7399
Query: 170 gaatacatataaaacaaagggacaagagttagtacgatcattgaacgacgctttcgaaag 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7400 gaatacatataaaacaaagggacaagagttagtacgatcattgaacgacgctttcgaaag 7459
Query: 230 atcagatgatcagtctttcgaaaaaattgtacttaaatataatgacttaatttcaactat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7460 atcagatgatcagtctttcgaaaaaattgtacttaaatataatgacttaatttcaactat 7519
Query: 290 tccgcgggatcttattgttaagaatttatcatcaaatcccgatgttcctgtctctttcgt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7520 tccgcgggatcttattgttaagaatttatcatcaaatcccgatgttcctgtctctttcgt 7579
Query: 350 tcatttccttttgcatacatgttatacaagagccatttatccacatgcaaggaaattgaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7580 tcatttccttttgcatacatgttatacaagagccatttatccacatgcaaggaaattgaa 7639
Query: 410 gaagtacacaagtttcagtaactttgtatatggtgaattgatgcctgatttcctcactat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7640 gaagtacacaagtttcagtaactttgtatatggtgaattgatgcctgatttcctcactat 7699
Query: 470 tgtctttaaaaaatgcggactgaattccaatagcatatttatggatcttggttctggtgt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7700 tgtctttaaaaaatgcggactgaattccaatagcatatttatggatcttggttctggtgt 7759
Query: 530 aggaaattgcgttatacaggcgtctcttgagttcggttgtaaattaagctttggttgcga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7760 aggaaattgcgttatacaggcgtctcttgagttcggttgtaaattaagctttggttgcga 7819
Query: 590 aataatggattctgcaagtgacatggcggaattgcagctcanagagttgaaaagtagatg 649
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7820 aataatggattctgcaagtgacatggcggaattgcagctcaaagagttgaaaagtagatg 7879
Query: 650 tgatctatggggtataaatctgccgccaattgatttttccttgaggaaaagcttcgtgga 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7880 tgatctatggggtataaatctgccgccaattgatttttccttgaggaaaagcttcgtgga 7939
Query: 710 taatgaacgagttcgtgaattaatacctcaatgtgatgttatcttaatcaacaactttat 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7940 taatgaacgagttcgtgaattaatacctcaatgtgatgttatcttaatcaacaactttat 7999
Query: 770 tttcgatgctcctttngacaaagaagtagaaaaagttgtacaaagcctcaaggccgggtc 829
||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 8000 tttcgatgctcctttgaacaaagaagtagaaaaggttgtacaaggcctcaaggccgggtc 8059
Query: 830 caaagat-atttctttg-aaagcatacgacctcctggttacagtatatattacgatgaca 887
| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8060 c-aagataatttctttgaaaagcatacgacctcctggttacagtataaattacgatgaca 8118
Query: 888 tggacaatatct 899
||||||||||||
Sbjct: 8119 tggacaatatct 8130
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7200
Number of Sequences: 1807
Number of extensions: 7200
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)