BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZF01FM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig952                                                         1388   0.0  

>3x_Contig952 
          Length = 3817

 Score = 1388 bits (700), Expect = 0.0
 Identities = 787/807 (97%), Gaps = 7/807 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 1266

                                                                        
Query: 148  ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 1206

                                                                        
Query: 208  ctcgttttttccctcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 ctcgttttttccctcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 1146

                                                                        
Query: 268  acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 1086

                                                                        
Query: 328  gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 1026

                                                                        
Query: 388  aattcacaagagtgtctaagtgttctccctagcggttgtaaaaagtcctcatttaaccga 447
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1025 aattcacaagagtgtctaagtgttct-cctagcggttgtaaaaagtcctcatttaaccga 967

                                                                        
Query: 448  tatttagcatgtacattttgatcgaatttattcaacctaacagaaaggtccaactttgtt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  tatttagcatgtacattttgatcgaatttattcaacctaacagaaaggtccaactttgtt 907

                                                                        
Query: 508  aaggcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagt 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  aaggcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagt 847

                                                                        
Query: 568  gatcttgtatctacattctgattgctgttatatggtgccttgcatttccattccggatta 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  gatcttgtatctacattctgattgctgttatatggtgccttgcatttccattccggatta 787

                                                                        
Query: 628  ttccagnggccggatgtatcctttgactaaaattgcagtggtatcgaattcaatgatata 687
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  ttccag-ggccggatgtatcctttgactaaaattgcagtggtatcgaattcaatgatata 728

                                                                        
Query: 688  tttcaccaaagatgatccatttgattcctttctgccgactttgtgaaactttaaatcaat 747
            ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 727  tttcaccaaagatgatccatttgattccttcttgccgactttgtgaaactttaaatcaat 668

                                                                        
Query: 748  atcactccgagtagccaatttcaagtacctctttggtcggcctattcaattgnatgcttt 807
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 667  atcactccgagtagccaatttcaagtacctcttt-gtcggcctattcaattgtatgcttt 609

                                                                        
Query: 808  ctctttatcctcttctttaaattaaccggcaaactcttctttggatattgtttctcaact 867
            ||| |||  ||||||| |||| |||||| | |||||||||| | ||| ||||||||||| 
Sbjct: 608  ctc-ttagtctcttctctaaa-taaccgccgaactcttcttcgaata-tgtttctcaac- 553

                                       
Query: 868  tttaacgctggaatgttccacatagct 894
            |||||||||| | ||| ||||||||||
Sbjct: 552  tttaacgctgaagtgtcccacatagct 526


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6818
Number of Sequences: 1807
Number of extensions: 6818
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)