BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF01RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1260 1542 0.0
>3x_Contig1260
Length = 5981
Score = 1542 bits (778), Expect = 0.0
Identities = 858/879 (97%), Gaps = 5/879 (0%)
Strand = Plus / Minus
Query: 46 ttggaacagccaaggatggtgcccaagtgaaatcagccggttcatgagcagcttcacccc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5002 ttggaacagccaaggatggtgcccaagtgaaatcagccggttcatgagcagcttcacccc 4943
Query: 106 aacccttgatcaaagccaatggtttcaagtttagttccttcaatttcttttcagaaacca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4942 aacccttgatcaaagccaatggtttcaagtttagttccttcaatttcttttcagaaacca 4883
Query: 166 agatcacggcagcaccaccatcgttaattggagaagcgtttggtgctgtgacagtacctt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4882 agatcacggcagcaccaccatcgttaattggagaagcgtttggtgctgtgacagtacctt 4823
Query: 226 taccatttgcggcaaacacagctctagcagatctcaatttttcaacgttcaacttacttg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4822 taccatttgcggcaaacacagctctagcagatctcaatttttcaacgttcaacttacttg 4763
Query: 286 gttcttcatctttcgtcacctgggtatccggtttccctctgaaacctttgatagtgatag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4762 gttcttcatctttcgtcacctgggtatccggtttccctctgaaacctttgatagtgatag 4703
Query: 346 gaacgatctccttgtcgaacttaccttgagattgagccaattgggccttttggtaagatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4702 gaacgatctccttgtcgaacttaccttgagattgagccaattgggccttttggtaagatt 4643
Query: 406 gaatggcaaaatcgtcttgttcttctctgctgaaatcgtagtcactggcacatttctcag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4642 gaatggcaaaatcgtcttgttcttctctgctgaaatcgtagtcactggcacatttctcag 4583
Query: 466 catgaacacccatggcctgaccgtcgtaagcatcgttcaaaccatctctttgaataccat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 catgaacacccatggcctgaccgtcgtaagcatcgttcaaaccatctctttgaataccat 4523
Query: 526 caatgactttgctttcaccaaatctagcaccactacggtgagacgacaagtagtatgggg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4522 caatgactttgctttcaccaaatctagcaccactacggtgagacgacaagtagtatgggg 4463
Query: 586 cattggacattgattcagcaccaccagcaacaattatatcggcagaatccgtctttatgg 645
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||
Sbjct: 4462 cattggacattgattcagcaccaccagcaacaataatatcggcagaaccggtcttaatgg 4403
Query: 646 cctgagcacccaagatgatagctttcataccagaagcacanaccttgntaacagtactgg 705
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 4402 cctgagcacccaagatgatagctttcataccagaagcacaaaccttgttaacagtactgg 4343
Query: 706 ncgac-atgtgttttcccaatccagcagcttatgccacttgtctagctggtgcttgacca 764
|||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 4342 -cgacaatgtgttttcccaacccagcagctaatgccacttgtctagctggtgcttgacca 4284
Query: 765 acatt-gcagatataacgttaccgaagatgatttncttgacagtgctttggatcgatctc 823
||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 4283 acattagcagatataacgttaccgaagatgatttcctcgacagtgc-ttggatcgatctc 4225
Query: 824 tgggacttgagctaaagcacctttgacagcagcagaacctagatcgacacatttcttaga 883
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4224 tggaacttgagctaaagcacctttgacagcagcagaacctagatcgacacagttcttaga 4165
Query: 884 ggacaaggacccttgg-aagaaccattgggagttcttgc 921
|||||| || |||||| |||||||| | |||||||||||
Sbjct: 4164 ggacaaagaaccttggaaagaaccaattggagttcttgc 4126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6276
Number of Sequences: 1807
Number of extensions: 6276
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)