BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF04RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1783 1413 0.0
>3x_Contig1783
Length = 22123
Score = 1413 bits (713), Expect = 0.0
Identities = 808/831 (97%), Gaps = 7/831 (0%)
Strand = Plus / Plus
Query: 47 taaagttgatgacagggtatcagacttcattattcctatgatctatgggtatgctaaggt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16738 taaagttgatgacagggtatcagacttcattattcctatgatctatgggtatgctaaggt 16797
Query: 107 tgttgatactgttttccatgcgactccgatttcgattggattgatcacgagaaggagtat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16798 tgttgatactgttttccatgcgactccgatttcgattggattgatcacgagaaggagtat 16857
Query: 167 atttagggccggaactagatatttccgcagaggcattgacgaacacggtaatgttggtaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16858 atttagggccggaactagatatttccgcagaggcattgacgaacacggtaatgttggtaa 16917
Query: 227 cttcaacgagacagagcaggtgctgtgtgttcaaaagccaatgaaggatggctatcactt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16918 cttcaacgagacagagcaggtgctgtgtgttcaaaagccaatgaaggatggctatcactt 16977
Query: 287 cttctcttttttacaaacgaggggttccgtgccagtttattgggcagagttgaacaattt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16978 cttctcttttttacaaacgaggggttccgtgccagtttattgggcagagttgaacaattt 17037
Query: 347 aaagtacaagccgaacttgttgttggctgagaacagctcgttagatgcaaccaagaagca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17038 aaagtacaagccgaacttgttgttggctgagaacagctcgttagatgcaaccaagaagca 17097
Query: 407 tttcgatgaacaaactcggttgtacaatgaaaactatttggtgaatctagtcaatcaaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17098 tttcgatgaacaaactcggttgtacaatgaaaactatttggtgaatctagtcaatcaaaa 17157
Query: 467 gggacacgaattacctgtgaaggaagcttacgaacaggttgttactgccttaaatgaccc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17158 gggacacgaattacctgtgaaggaagcttacgaacaggttgttactgccttaaatgaccc 17217
Query: 527 aaagcttcactatatctacttcgatttccatcacgaatgtaggaatatgcantggcacaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17218 aaagcttcactatatctacttcgatttccatcacgaatgtaggaatatgcaatggcacaa 17277
Query: 587 ggtcaaattgttattggatcatttgcaatcaatgggcttgtccaattaagatttcttcca 646
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 17278 ggtcaaattgttattggatcatttgcaatcaatgggcttgtccaataaagatttcttcca 17337
Query: 647 caagactttggatgctaatggtgtttacactgcaagttttcttcaagcagcaatcggtgg 706
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 17338 caagactttggatgctaatggtg-ttacactgcaagttttctccaagcagcaatcggtgg 17396
Query: 707 ttagaactaactgtatggattgcctggacag-actaatgtgtttcaatccgtggtagctc 765
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 17397 ttagaactaactgtatggattgcctggacagaactaatgtggttcaatccgtgttagctc 17456
Query: 766 attgggtgttacaagaagaattttagactggtgggattgaccgaccattcccggctnatt 825
||||||||||||||||||| ||| ||||| || |||||||||||| | | |||||| | |
Sbjct: 17457 attgggtgttacaagaagagtttaagact-gttggattgaccgacga-taccggctta-t 17513
Query: 826 gggaattgaacaagaacttggttgtttggaattccaagctttttgggcaga 876
||||||| |||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 17514 gggaattagacaagaactt-gttgttt-gaattccaaagcttttgggcaga 17562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6103
Number of Sequences: 1807
Number of extensions: 6103
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)