BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF05RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 1398 0.0
>3x_Contig1512
Length = 8803
Score = 1398 bits (705), Expect = 0.0
Identities = 838/869 (96%), Gaps = 10/869 (1%)
Strand = Plus / Plus
Query: 48 ttgagaagattatatatatggcattgcctgcctctaatgatctggctactgatactatag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5142 ttgagaagattatatatatggcattgcctgcctctaatgatctggctactgatactatag 5201
Query: 108 agaatagggtacaggcaggtgcaggaagacctggcttgtctgtgccgataatgagtagga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5202 agaatagggtacaggcaggtgcaggaagacctggcttgtctgtgccgataatgagtagga 5261
Query: 168 acttcgtgcagatgaattcgaggcttggcgccccattcatgatcattgatgagataataa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5262 acttcgtgcagatgaattcgaggcttggcgccccattcatgatcattgatgagataataa 5321
Query: 228 ggatcttcaattggactaatgcagcttatactttatgcataatgtcattctattcgtttc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5322 ggatcttcaattggactaatgcagcttatactttatgcataatgtcattctattcgtttc 5381
Query: 288 tagtgttgaaaccattaccagtgcttgtatcgggtcctttcgtgtacattctatttggca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 tagtgttgaaaccattaccagtgcttgtatcgggtcctttcgtgtacattctatttggca 5441
Query: 348 tcatgtcaccaacgtatatggatatacataagcctgatcctcacatgaacttagatcata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5442 tcatgtcaccaacgtatatggatatacataagcctgatcctcacatgaacttagatcata 5501
Query: 408 acccaattcctgctcgcgggcctccgttgaaaaatccacaattgccaggtcctgttccag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 acccaattcctgctcgcgggcctccgttgaaaaatccacaattgccaggtcctgttccag 5561
Query: 468 agtttagcaaggagttcatattaaacttaactgacttgcagaaccatatgacgttatatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5562 agtttagcaaggagttcatattaaacttaactgacttgcagaaccatatgacgttatatg 5621
Query: 528 tgatggcatacgatttcgtatcgaattttttggctaagtttgcatactttaagaacgaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5622 tgatggcatacgatttcgtatcgaattttttggctaagtttgcatactttaagaacgaga 5681
Query: 588 atgtcagttcggccgtatttctaggactactgctattctcttg-atcaattcgctagcta 646
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5682 atgtcagttcggccgtatttctaggactactgctattctcttgtatcaattcgctagcta 5741
Query: 647 ttgatagtatttcctcgcttataccttggaaattcatctttttatgtgccggatggactt 706
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5742 ttgatagtatttcctcgctaataccttggaaattcatctttttatgtgccggatggactt 5801
Query: 707 tttgtatatcgttacattcaaagat-agggacaccattgtttattttgatgtattcagaa 765
|| |||||||||||| ||||||| |||||||||| |||||| |||||||||||||||
Sbjct: 5802 ttgtaatatcgttacatccaaagataagggacacca-tgtttaatttgatgtattcagag 5860
Query: 766 gagacacggttatagatactttaccaagatgacccccatagagcggtttattaacgaata 825
|||||||||||| ||||| |||||||||||| || ||||||||| |||| |||| |||
Sbjct: 5861 gagacacggttaaggatac-ttaccaagatgaaccacatagagcgtattataaacg-ata 5918
Query: 826 aatttggattttta-gaaccccgagaaagaaaaagaagcttcgatttccgaccttacaaa 884
||||| |||| ||| |||||| ||||||| || |||||||||||| | ||| ||| || |
Sbjct: 5919 aattt-gattcttatgaacccagagaaag-aagagaagcttcgatattcgagctt-caga 5975
Query: 885 ggttc-atgcggaggaaaaaagttgggaa 912
||||| |||||||||||||||||||||||
Sbjct: 5976 ggttcaatgcggaggaaaaaagttgggaa 6004
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6278
Number of Sequences: 1807
Number of extensions: 6278
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)