BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF06RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1183 0.0
>3x_Contig429
Length = 1524
Score = 1183 bits (597), Expect = 0.0
Identities = 597/597 (100%)
Strand = Plus / Minus
Query: 47 attgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttccttggca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attgccgagtttgggaagaagggtaaaccaactccttcccaatctactacttccttggca 538
Query: 107 aaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaattaccgta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaattagcgtcggaaggaattgaatcttattcagactcaaagatctctgaaattaccgta 478
Query: 167 gatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatctctaaga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gatataaatcagttggacaccgaaaacttatctgaagctgaagacctaaaatctctaaga 418
Query: 227 agagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagcgccaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agagcttctttggcaaccttaggctcaattggttttgatgacaatgaaaatagcgccaga 358
Query: 287 agagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcccgtgcg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agagaacacagggaacaaggtaaagtcaaatgggatatttatatggagtacgcccgtgcg 298
Query: 347 tgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctgttggcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgtaacccccgcaacgtgtgtgtgtttttgggtttcctaatcctctcgatgctgttggcc 238
Query: 407 gtcattggtaatttctggctcaaacactggtcagaagtcaatactgagaaaggctataac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtcattggtaatttctggctcaaacactggtcagaagtcaatactgagaaaggctataac 178
Query: 467 ccccatgccacaagatatttgatgatttacttagctttaggtgttggttccgctctggca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ccccatgccacaagatatttgatgatttacttagctttaggtgttggttccgctctggca 118
Query: 527 acattaatacagactattgttctatgggtattctgtactatccatggctccaagtattta 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 acattaatacagactattgttctatgggtattctgtactatccatggctccaagtattta 58
Query: 587 catgatgcaatggcttcaagtgttttaaaggcacctatgtctttctttgaaacaact 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 catgatgcaatggcttcaagtgttttaaaggcacctatgtctttctttgaaacaact 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6737
Number of Sequences: 1807
Number of extensions: 6737
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)