BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF07FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1310 688 0.0
>3x_Contig1310
Length = 7790
Score = 688 bits (347), Expect = 0.0
Identities = 432/452 (95%), Gaps = 7/452 (1%)
Strand = Plus / Minus
Query: 459 acatatactttattcaaaactcatgtatttctaacatttgcactacataaacatttgata 518
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 7790 acatatactttattcaaaactcatgtatttctaacatntgcactacataaacatntgata 7731
Query: 519 gacactaaaagccaatcttttacccccttagtacagcttttaaatgctagtatactaagc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 gacactaaaagccaatcttttacccccttagtacagcttttaaatgctagtatactaagc 7671
Query: 579 gagagtttttaaaggtcgcgatttactccagttcgtcttgaaccctttgctgattcaaaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 gagagtttttaaaggtcgcgatttactccagttcgtcttgaaccctttgctgattcaaaa 7611
Query: 639 taaatcatcaacactttttgaatgttttccccagatataaagataatgaccaaacagatt 698
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct: 7610 taaatcatcaacactttttgaatgttttccccagatataaagaaaatgacaaacaagatt 7551
Query: 699 taagaacttcgtttgaatttatccaaa-taacttcttatataccgnaaacggtacatatc 757
||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 7550 taagaacttcgtttgaa-ttatccaaattaacttcttatataccggaaacggtacatatc 7492
Query: 758 acctggctgagacattcgctactcaagaactctaatactgag-tattcagcccttcagat 816
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 7491 acctggctgagacattcgctactcaag-actctaatactgagttattcagcctttcagat 7433
Query: 817 atcgctgttttcgatcgc-tttctaatatttgaagagacccaggtattcaacaa-gtatt 874
|||||||||||||||||| |||||||| || ||||||||| |||||||||||| |||||
Sbjct: 7432 atcgctgttttcgatcgcttttctaattttggaagagaccagggtattcaacaaggtatt 7373
Query: 875 attcctcgaccgg-actatttattataggaac 905
||||||||||||| ||||||||||||| ||||
Sbjct: 7372 attcctcgaccggaactatttattataagaac 7341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6582
Number of Sequences: 1807
Number of extensions: 6582
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)