BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF07RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1473 0.0
3x_Contig1025 517 e-146
>3x_Contig1337
Length = 7771
Score = 1473 bits (743), Expect = 0.0
Identities = 796/810 (98%), Gaps = 3/810 (0%)
Strand = Plus / Minus
Query: 43 gcttgagtagaagaagagtacttggtaacagctctggtaccttcagaaacagcgtgcttg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 gcttgagtagaagaagagtacttggtaacagctctggtaccttcagaaacagcgtgcttg 2652
Query: 103 gccaattcacctggcaagatcaatctgacagctgtttggatttctctagcagaaatagta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 gccaattcacctggcaagatcaatctgacagctgtttggatttctctagcagaaatagta 2592
Query: 163 gatttcttgttgtaagcagccaacttggaagattcagtagcgattctttcaaagatatcg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 gatttcttgttgtaagcagccaacttggaagattcagtagcgattctttcaaagatatcg 2532
Query: 223 ttaacgaaagagttcaagatggacatagacttttgggaaataccagtgtctggatgggtt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 ttaacgaaagagttcaagatggacatagacttttgggaaataccagtgtctggatgggtt 2472
Query: 283 tgcttcaaaaccttgtagatgtaagaggagtaagtttcctttctagccttagttctcttc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 tgcttcaaaaccttgtagatgtaagaggagtaagtttcctttctagccttagttctcttc 2412
Query: 343 ttagatggatcggtagaagaggaagtcttcttagcagctggcttcttttcagctggagcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2411 ttagatggatcggtagaagaggaagtcttcttagcagctggcttcttttcagctggagcc 2352
Query: 403 ttggatgctggggccttggatgctttagcagacattatagttgtaatatttgtttttagt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 ttggatgctggggccttggatgctttagcagacattatagttgtaatatttgtttttagt 2292
Query: 463 aatgtgatagtactggttttcaaataactagtgcttgtcgagggtgaattacagaaccat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 aatgtgatagtactggttttcaaataactagtgcttgtcgagggtgaattacagaaccat 2232
Query: 523 atatatttctaatagaaacggataatctataaggagaaagggtaaaagtatccatttagt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 atatatttctaatagaaacggataatctataaggagaaagggtaaaagtatccatttagt 2172
Query: 583 cagtctctttatatacaatttggttcttcgccatagtaaaagcgatttgccttccttaaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 cagtctctttatatacaatttggttcttcgccatagtaaaagcgatttgccttccttaaa 2112
Query: 643 ttgngtctttggtacttggtttttttgtttttcacgcttaaaaggcatgtcatgaccaca 702
||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2111 ttgtgtctttggtacttgttttttttgtttttcacgctaaaaaggcatgtcatgaccaca 2052
Query: 703 gcttcgctgtgggtaacccgtttactatggcggatggagatattct-cgcgcgtaaccgg 761
|||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2051 gcttcgctgtggtaaaccggtttactatggcggatggagatattctccgcgcgtaaccgg 1992
Query: 762 tagcacggtctacgaaaaagtttcctttttcgggaac-accacgggagttcatagttaaa 820
||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||
Sbjct: 1991 tagcacggtctacgaaaaagtttcctttttcggaaacaaccacgggagtccatagtaaaa 1932
Query: 821 aggaatccgtggattg-ttgaaaaaatggt 849
||||||||| ||||| |||||||||||||
Sbjct: 1931 gggaatccgttgattgtttgaaaaaatggt 1902
>3x_Contig1025
Length = 2581
Score = 517 bits (261), Expect = e-146
Identities = 339/365 (92%)
Strand = Plus / Plus
Query: 43 gcttgagtagaagaagagtacttggtaacagctctggtaccttcagaaacagcgtgcttg 102
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 333 gcttgagtggaggaagagtacttggtaacagctctagtaccttcagaaacagcgtgctta 392
Query: 103 gccaattcacctggcaagatcaatctgacagctgtttggatttctctagcagaaatagta 162
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||
Sbjct: 393 gccaattcacctggcaagatcaatctaacagcagtttgaatttctctagcagagatggta 452
Query: 163 gatttcttgttgtaagcagccaacttggaagattcagtagcgattctttcaaagatatcg 222
|| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 453 gacttcttgttgtaagcagccaacttggacgattcggtagcaattctttcaaagatatcg 512
Query: 223 ttaacgaaagagttcaagatggacatagacttttgggaaataccagtgtctggatgggtt 282
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttaacgaaagagttcaagatagacatagacttttgggaaataccagtgtctggatgggtt 572
Query: 283 tgcttcaaaaccttgtagatgtaagaggagtaagtttcctttctagccttagttctcttc 342
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 573 tgcttcaaaaccttgtagatgtaagaagagtaagtttcctttctagccttggttctcttc 632
Query: 343 ttagatggatcggtagaagaggaagtcttcttagcagctggcttcttttcagctggagcc 402
|| |||||||| |||||| ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 633 tttgatggatcaacagaagaagaagtcttcttggcagcaggtttcttttcggcaggagcc 692
Query: 403 ttgga 407
|||||
Sbjct: 693 ttgga 697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7045
Number of Sequences: 1807
Number of extensions: 7045
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)