BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF08FM1.SCF screened BAC_end
(853 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1310 505 e-143
>3x_Contig1310
Length = 7790
Score = 505 bits (255), Expect = e-143
Identities = 270/275 (98%)
Strand = Plus / Plus
Query: 86 ccgaagctgctactttcgatccaagttctcgagtctatgattcttcatgagatcacctgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3696 ccgaagctgctactttcgatccaagttctcgagtctatgattcttcatgagatcacctgg 3755
Query: 146 acagccacccaattgttacaatagacctcttgttggctgatcggttccaccttttctttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3756 acagccacccaattgttacaatagacctcttgttggctgatcggttccaccttttctttc 3815
Query: 206 ataacttgagaactctcatcttttaaagtgaaaaagtctaatattgagagatgagcctta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3816 ataacttgagaactctcatcttttaaagtgaaaaagtctaatattgagagatgagcctta 3875
Query: 266 gcaactgagatagtaactactcgtatccaaacaacacagtaaaaggatatacatagcact 325
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3876 gcaactgagaaagtaactactcgtatccaaacaacacagtaaaaggatatacatagcact 3935
Query: 326 ggaataatattggcaaaaccatcacattgacgaaa 360
|||||||||||| |||||| ||||| ||||||||
Sbjct: 3936 ggaataatattgccaaaacagtcacaatgacgaaa 3970
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,838
Number of Sequences: 1807
Number of extensions: 48838
Number of successful extensions: 5870
Number of sequences better than 1.0e-20: 1
length of query: 853
length of database: 10,358,551
effective HSP length: 16
effective length of query: 837
effective length of database: 10,329,639
effective search space: 8645907843
effective search space used: 8645907843
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)