BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF08RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1516 0.0
>3x_Contig1794
Length = 36744
Score = 1516 bits (765), Expect = 0.0
Identities = 847/868 (97%), Gaps = 5/868 (0%)
Strand = Plus / Plus
Query: 49 ttcgtttggttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29968 ttcgtttggttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttt 30027
Query: 109 tacaggtttagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30028 tacaggtttagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagttt 30087
Query: 169 cttcgggagcggcttcttgtcttcctttggtccttccctagacttctgttctgctcgctt 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 30088 cttcgggagcggcttcttgtcttcctttggtccttccctagacttctgctctgctcgctt 30147
Query: 229 cattaattcatcaaacgatagtttcttgattggctcccttttcggtaccacgacaggata 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30148 cattaattcatcaaacgatagtttcttgattggctcccttttcggtaccacgacaggata 30207
Query: 289 ctttccgcttgtggtattgacaccaggttttttcttataaattggagcctcatccttcgg 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 30208 ctttccgcttgtggtattgacaccaggttttttcttataaattggagcctcatc-ttcgg 30266
Query: 349 cgatgacgctttatgcctggccttagcagcaggtttagtcgatgtggatgatataccttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30267 cgatgacgctttatgcctggccttagcagcaggtttagtcgatgtggatgatataccttg 30326
Query: 409 cttcaacctacgcgcttcctttaatctttgaatagccgggtcaacttcacgaacgtaatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30327 cttcaacctacgcgcttcctttaatctttgaatagccgggtcaacttcacgaacgtaatc 30386
Query: 469 cttgggaagtagtttttcttcagattgaagagatttagctttattttggtttgcggaatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30387 cttgggaagtagtttttcttcagattgaagagatttagctttattttggtttgcggaatg 30446
Query: 529 attcggttcattaatcttagtggtctgcttcaactgctgtaacttagccaagaagctcat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30447 attcggttcattaatcttagtggtctgcttcaactgctgtaacttagccaagaagctcat 30506
Query: 589 tattttgctatatcttttgagagagcaggagtactggtagatagaatatcgattaatgta 648
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 30507 tattttgctatatctttgaagagagcaggagtactggtagatagaatatcgattaatgta 30566
Query: 649 tactcactgcaccgtagcagcggttaacaatacagtcttgtgcgatgattgcttttgatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30567 tactcactgcaccgtagcagcggttaacaatacagtcttgtgcgatgattgcttttgatc 30626
Query: 709 cactggtacatcaacttccatcatgatgcttattttatgttatgtattgtntcccattta 768
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 30627 cactggtacatcaacttccatcatgatgcttattttatgttatgtattgtttccatatta 30686
Query: 769 ttacatagtcattagatacgctacactaatagttcacgtggatcttgggatttattctga 828
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 30687 ttacatagtcattagatacgctacactaatagttcacgt-gatcttgagatttattctga 30745
Query: 829 ttcattattgaaatgaatcatcggcattcgattgcgatccaacttttttgcaaggactgg 888
|||| |||||||||||||||||| ||| ||||||||||||||| || ||||||| ||||
Sbjct: 30746 ttca-tattgaaatgaatcatcgtcatccgattgcgatccaac-ttcttgcaagaactgt 30803
Query: 889 tcgaacttattaacggatttcgtttggc 916
||||||| || | | |||||||||||||
Sbjct: 30804 tcgaactcatcagc-gatttcgtttggc 30830
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5864
Number of Sequences: 1807
Number of extensions: 5864
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)