BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZF09FM1.SCF screened BAC_end
         (954 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1491                                                        1304   0.0  

>3x_Contig1491 
          Length = 9571

 Score = 1304 bits (658), Expect = 0.0
 Identities = 712/728 (97%), Gaps = 2/728 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   gtgacgcagtgttgaaagaatgcgaaacggtacgatatctgcttcgccacgcagacttca 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9186 gtgacgcagtgttgaaagaatgcgaaacggtacgatatctgcttcgccacgcagacttca 9127

                                                                        
Query: 149  agaatagaactatgagaaccatgagatgtatggattgtggtgaaattagctgtggatcga 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9126 agaatagaactatgagaaccatgagatgtatggattgtggtgaaattagctgtggatcga 9067

                                                                        
Query: 209  ctttcatttgcttgcaatgcggattttgcgggtgctggaataacaaccatttcttggatc 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9066 ctttcatttgcttgcaatgcggattttgcgggtgctggaataacaaccatttcttggatc 9007

                                                                        
Query: 269  attctcaaaaattgggacacatctttggggttaattcatcaaatggtctagtgttctgtt 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9006 attctcaaaaattgggacacatctttggggttaattcatcaaatggtctagtgttctgtt 8947

                                                                        
Query: 329  tcagatgtggtgatttcatggctgatctggtcgctgaaattccggctagccaatgggata 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8946 tcagatgtggtgatttcatggctgatctggtcgctgaaattccggctagccaatgggata 8887

                                                                        
Query: 389  ctgtaatggaaaagaccgagctaccagctagcttacacagagatggattacaaggtttgg 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8886 ctgtaatggaaaagaccgagctaccagctagcttacacagagatggattacaaggtttgg 8827

                                                                        
Query: 449  tgaacatgggatccacctgtttcatgagtagtatcattcaaaccatcatacataatccat 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8826 tgaacatgggatccacctgtttcatgagtagtatcattcaaaccatcatacataatccat 8767

                                                                        
Query: 509  actttgtcgaggacctgttatctcataagcattgcaacaattgtgacattaaatcatgaa 568
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8766 actttgtcgaggacctgttatctcataagcattgcaacaattgtgacattaaatcaggaa 8707

                                                                        
Query: 569  ccaagtgcgtctcttgtgcattggatgaaattgcttgtgacttttacgggaatggacctg 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8706 ccaagtgcgtctcttgtgcattggatgaaattgcttgtgacttttacgggaatggacctg 8647

                                                                        
Query: 629  ngacagggaagtcttcctncgttagcataagctttgtaaaccctttatctgcatcatggc 688
             ||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 8646 ggacagggaagtcttcctccgttagcaaaggctttgtaaaccttttatctgcatcatggc 8587

                                                                        
Query: 689  atatcaatcatcatcttgttggctcgtcac-acaggatgcacatgattactggcagttct 747
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 8586 atatcaatcatcatcttgttggctcgtcacaacaggatgcacatgagtactggcagttct 8527

                                                                        
Query: 748  ta-tgaaccaactgcttacggatcatgcacgatttttccgatcggcaaaagcccttgatt 806
            || |||||||||||| |||||||||||||||| | ||| ||||| |||| |||| |||||
Sbjct: 8526 tattgaaccaactgcatacggatcatgcacgagtattcggatcgtcaaaggcccctgatt 8467

                    
Query: 807  gtcaatgt 814
            ||||||||
Sbjct: 8466 gtcaatgt 8459


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5926
Number of Sequences: 1807
Number of extensions: 5926
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)