BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF09RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1475 0.0
>3x_Contig1759
Length = 25622
Score = 1475 bits (744), Expect = 0.0
Identities = 871/901 (96%), Gaps = 12/901 (1%)
Strand = Plus / Minus
Query: 45 cttgtatatgccaacggtagtgtcagaagagaggcatactctcaccgagaatatttagac 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10027 cttgtatatgccaacggtagtgtcagaagagaggcatactctcaccgagaatatttagac 9968
Query: 105 gctgaaactggggaagcagttgataatagtcagttgtctaaggtctacacttttggcgat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9967 gctgaaactggggaagcagttgataatagtcagttgtctaaggtctacacttttggcgat 9908
Query: 165 gagatcatagaattaacagaagacgagaatctcaaaattcaaagcggatacagcgaacat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9907 gagatcatagaattaacagaagacgagaatctcaaaattcaaagcggatacagcgaacat 9848
Query: 225 gaatcatttttgaagttaataggattcaggtcaacggaacagtgtttacactattatgac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9847 gaatcatttttgaagttaataggattcaggtcaacggaacagtgtttacactattatgac 9788
Query: 285 aacattgacgtaccagcttttgttgtaccgaacgaggaagactatgcaggctcgatcaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9787 aacattgacgtaccagcttttgttgtaccgaacgaggaagactatgcaggctcgatcaag 9728
Query: 345 acactagcatcactatatagaacaatgttattcaaaaagaagtctgcaatggtctgggga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9727 acactagcatcactatatagaacaatgttattcaaaaagaagtctgcaatggtctgggga 9668
Query: 405 aaactacggccaaactctccaccatccatgtttgtcctaacaccaagctccaagaaagat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9667 aaactacggccaaactctccaccatccatgtttgtcctaacaccaagctccaagaaagat 9608
Query: 465 tataaccaaggtttctatctctacaaggttccatttatggaagatgtccgaaaacttcct 524
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9607 tataaccaaggtttctatctctacaaggttccatttatggaagaggtccgaaaacttcct 9548
Query: 525 gatttcttaaatcattctgcgttaatagaatcagatgattataaagtgatgagcaaagtg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547 gatttcttaaatcattctgcgttaatagaatcagatgattataaagtgatgagcaaagtg 9488
Query: 585 acagaaactttgataaacttcttcaatctcaaaaatgggtatagaccatcagattttcat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9487 acagaaactttgataaacttcttcaatctcaaaaatgggtatagaccatcagattttcat 9428
Query: 645 aaccctgcattacaaaagcatttcaaaatattaatggaaataccttt-acagattgaagt 703
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||
Sbjct: 9427 aaccctgcattacaaaagcatttcaaaatattaagggaa-taccttttacagattgaggt 9369
Query: 704 ggataaatcgaaacctngagatgaaagtgatgaaacccttcaaaa-gtgaagcagattta 762
|||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 9368 ggataaatcgaaacctgaagatgaaggtgatgaaacccttcaaaaggtgaagcagattta 9309
Query: 763 tgcacgaatttgcagttctgcgaaatctgatgacgtaaagcaacaacgtttagtaaaat- 821
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9308 tgcacgaattgccagttctgcgaaatctgatgacgtaaagcaacaacggttagtaaaata 9249
Query: 822 cctgaaacttt-gaattctttct-caaccgtctgattacct--aaaatcgattcgaaacc 877
||||||||||| ||||||||||| ||||||||||| || || || ||||| |||||||
Sbjct: 9248 cctgaaactttggaattctttctacaaccgtctgagtaacttagaagtcgatacgaaacc 9189
Query: 878 accc--aaataagaaagc-aagctt-atctgtagggtattccatagttaaacagtttatg 933
|| |||||||||||| |||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 9188 caccaaaaataagaaagcaaagcttaatctgtagtgtagtccatagttaaacagtttatg 9129
Query: 934 a 934
|
Sbjct: 9128 a 9128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7263
Number of Sequences: 1807
Number of extensions: 7263
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)