BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF11FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1402 1346 0.0
>3x_Contig1402
Length = 8511
Score = 1346 bits (679), Expect = 0.0
Identities = 744/759 (98%), Gaps = 5/759 (0%)
Strand = Plus / Minus
Query: 87 cccaagcccagaaaccagatattgaaggatttctctgagctgatcatatgcttgccggat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3507 cccaagcccagaaaccagatattgaaggatttctctgagctgatcatatgcttgccggat 3448
Query: 147 gggttttgcatacagtaaatatgaaaaataggtacactttgagtatgctagatagacttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3447 gggttttgcatacagtaaatatgaaaaataggtacactttgagtatgctagatagacttt 3388
Query: 207 tcaacgttaattgatgtaatactaatacaaattggttcaaaagcactatagaccagcagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3387 tcaacgttaattgatgtaatactaatacaaattggttcaaaagcactatagaccagcagt 3328
Query: 267 caataacactaggtagaaaacatgctgtgttcgcaataacattgttgagaaattattgct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3327 caataacactaggtagaaaacatgctgtgttcgcaataacattgttgagaaattattgct 3268
Query: 327 ggcaaacattcgttacaaacctatatttttcgaagagtcataggttcagtaatactgttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 ggcaaacattcgttacaaacctatatttttcgaagagtcataggttcagtaatactgttc 3208
Query: 387 agaattttcattatattaaaactactcgtccctcagtcatgagatctcgtattacactat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 agaattttcattatattaaaactactcgtccctcagtcatgagatctcgtattacactat 3148
Query: 447 aacgtattacgtatactgccccgattaataagtaaatttcttcatttaaatcttcaataa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3147 aacgtattacgtatactgccccgattaataagtaaatttcttcatttaaatcttcaataa 3088
Query: 507 tcactgagtaacagtgttttccatcatcatcggtcgttaatttcgaatcaataccacttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3087 tcactgagtaacagtgttttccatcatcatcggtcgttaatttcgaatcaataccacttt 3028
Query: 567 cgtcaactaccccaccacaaactagtataaatacagttgtattccaatcgggttcatcaa 626
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3027 cgtcaactaccccaccacaaactagtataaatacagttttattccaatcgggttcatcaa 2968
Query: 627 tcatactgatggaaccctcagtatcgttaacggcttgcagttcttctggtaagtgcttaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2967 tcatactgatggaaccctcagtatcgttaacggcttgcagttcttctggtaagtgcttaa 2908
Query: 687 gtactgcgttgttaaacagttttagtaatatgtcagaatggcttatatggtacttcacct 746
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 2907 gtactgcgttgttaaacagttttagtaatatgtcagaatgcttcatatggtacttcacct 2848
Query: 747 ctttttttggacatcaataaaatttagtctgctgaagcccgcattattgggttagttcgg 806
| || ||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||
Sbjct: 2847 c-ttctttggacatcaat-aaatctagtctgctgaggcccgcattattggg-tagttcgg 2791
Query: 807 attgttggtcttagtaaaaggctgttatttgtcaatttt 845
|||||| ||||||| ||| |||| ||||||||||||||
Sbjct: 2790 attgtt-gtcttaggtaaatgctg-tatttgtcaatttt 2754
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6467
Number of Sequences: 1807
Number of extensions: 6467
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)