BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF11RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig772 1427 0.0
>3x_Contig772
Length = 2243
Score = 1427 bits (720), Expect = 0.0
Identities = 829/852 (97%), Gaps = 10/852 (1%)
Strand = Plus / Plus
Query: 48 cttttttgatatgacctatataacaaaagcgattattaacatactcaataacagtttttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 cttttttgatatgacctatataacaaaagcgattattaacatactcaataacagtttttt 950
Query: 108 atcgttcagtgtcgtatcacttttgttaactaagacataattttcattgttgtgttttct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 atcgttcagtgtcgtatcacttttgttaactaagacataattttcattgttgtgttttct 1010
Query: 168 tttgttatagctcagtactatatcacagatcagtataccgtttaaactctgaacattata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 tttgttatagctcagtactatatcacagatcagtataccgtttaaactctgaacattata 1070
Query: 228 ttgtgttccttcgttcatcagtaaaaaaaaaggtatgtgtgactactatgtccgattaca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ttgtgttccttcgttcatcagtaaaaaaaaaggtatgtgtgactactatgtccgattaca 1130
Query: 288 ataggttcgggtttccctcagaggcgatggatatatatatattccctaaactctaacact 347
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 1131 ataggttcgggtttccctcagaggcgatggatatatatctctcccctaaactctaacact 1190
Query: 348 attcaagattttagacttttacctataaaaaaagtctttggttcatattactaacaaatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 attcaagattttagacttttacctataaaaaaagtctttggttcatattactaacaaatt 1250
Query: 408 cttttgattattatacacagagctaatcaactgttcgttattagtgttttttccggttaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 cttttgattattatacacagagctaatcaactgttcgttattagtgttttttccggttaa 1310
Query: 468 aaagaacatcttctttgccattgtctaaaaccatgtttagacttgtccaacaacagaccc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 aaagaacatcttctttgccattgtctaaaaccatgtttagacttgtccaacaacagaccc 1370
Query: 528 taaagagtagggtcccaaatcagttcgtttctgcgtccagaaattctttatattcccagt 587
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1371 taaagagtagggtcccaaatcagttcgtttctgcgtccagaaattctttaaattcccagt 1430
Query: 588 tccgtttcaacagcgctgtcgcactagatgcgt-atcctcaacaggatccaacaactgca 646
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 1431 tccgtttcaacagcgctgtcgcactaga-gcgtaatcctcaacaggatccaacaactgca 1489
Query: 647 gcaccagccaagtcgtcttcggataagagaaactctaagaagaagtatgaaaataatgaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 gcaccagccaagtcgtcttcggataagagaaactctaagaagaagtatgaaaataatgaa 1549
Query: 707 atcattgaacgtaacgttaaaaaggtccgccaccctag-aggaacataaaattcgataat 765
|||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||
Sbjct: 1550 atcattgaacgtaacgttaaaaaggtccgcaacctaagaagaaacataaaattcgataat 1609
Query: 766 ttc-aaaactctcctatttct-cagctttctctaaactt-atgccttgaatgactgtttg 822
||| |||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 1610 ttcaaaaactctcctaattctccagctttctctaaacttaatgccttggatgactgtttg 1669
Query: 823 gccagaggtttgg-agcatcttcct-ttgtgcccccgaaggt-aattcctaaatcaatc- 878
||||||||||||| ||||||||||| | |||||||||| ||| |||||||| |||||||
Sbjct: 1670 gccagaggtttggaagcatcttcctctcgtgcccccgatggtaaattcctagatcaatct 1729
Query: 879 tcattgttttgg 890
||||||||||||
Sbjct: 1730 tcattgttttgg 1741
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,010
Number of Sequences: 1807
Number of extensions: 10010
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)