BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZF12RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1219 0.0
>3x_Contig1699
Length = 18038
Score = 1219 bits (615), Expect = 0.0
Identities = 721/748 (96%), Gaps = 8/748 (1%)
Strand = Plus / Minus
Query: 48 ttgttataaatgcttgcttctatcagttgatgtgatatttctaggtattgaaacttaaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1971 ttgttataaatgcttgcttctatcagttgatgtgatatttctaggtattgaaacttaaag 1912
Query: 108 aggtacattgtctatatctattttaatttaatgttttacgtactgaactaaaaacaacat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1911 aggtacattgtctatatctattttaatttaatgttttacgtactgaactaaaaacaacat 1852
Query: 168 tcgaaaggtagtcattgtttcatggccctcaatttgtaaaataatattggtctacgaatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 tcgaaaggtagtcattgtttcatggccctcaatttgtaaaataatattggtctacgaatt 1792
Query: 228 gtcttctaacatgttatccaaatacactgaaggagtaatagaagatgatttattgtgccc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 gtcttctaacatgttatccaaatacactgaaggagtaatagaagatgatttattgtgccc 1732
Query: 288 tttacttctgccctgtcttttttggttatcgagagtagtggaagctgttaaatcaattgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 tttacttctgccctgtcttttttggttatcgagagtagtggaagctgttaaatcaattgt 1672
Query: 348 tgaatccaccaatttgctcaaactggatttactcttttcatgcttatatgttcttctttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 tgaatccaccaatttgctcaaactggatttactcttttcatgcttatatgttcttctttc 1612
Query: 408 cggagatactgtgcgtgttggttccatcatctctggtgtatcgatagatactgctgattg 467
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1611 cggagatactgtgcgtgttggttccatcatctctggtgtatcgatagagactgctgattg 1552
Query: 468 gttcaagttattgaacagtgtcgatctccgttgttggttcataacttccatcgttggtga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 gttcaagttattgaacagtgtcgatctccgttgttggttcataacttccatcgttggtga 1492
Query: 528 gatgtataaagatttcctcacacctgtattggctgcatcaatagcatctactctttccag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 gatgtataaagatttcctcacacctgtattggctgcatcaatagcatctactctttccag 1432
Query: 588 tggattcatagatcccagattggtattaccgatagatgatggtgttccttctncgaaatc 647
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 1431 tggattcatagatcccagattggtattaccgatagatgatggtgttcctcctccgaaacc 1372
Query: 648 atcgtcggtggattcannctacaagtc-aatcatgctattagatgcccttctatacggag 706
||||||||||||| || ||| |||| ||||||||||| ||||||||| |||||||||
Sbjct: 1371 atcgtcggtggatcca-cctaacagtcgaatcatgctatgagatgccctcttatacggag 1313
Query: 707 tatacgaaattgtttttcggcattttttcgtaagcacctggagatgtctttgtatgtggc 766
|| ||| ||||| |||| || ||||||||| ||| |||||| ||||||||||||| ||
Sbjct: 1312 taaacg-aattg--tttccgccatttttcgtaggca-ctggag-tgtctttgtatgt-gc 1259
Query: 767 taattttctcatcagctttattgtagcc 794
|||| | |||||||||||||| ||||||
Sbjct: 1258 taatatcctcatcagctttatagtagcc 1231
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7546
Number of Sequences: 1807
Number of extensions: 7546
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)