BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG01FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig610 959 0.0
3x_Contig471 496 e-140
>3x_Contig610
Length = 2250
Score = 959 bits (484), Expect = 0.0
Identities = 502/508 (98%)
Strand = Plus / Minus
Query: 86 cagcgtatatatacagtaaaatagatattgaaagttcggagagtttcattagtcaattga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cagcgtatatatacagtaaaatagatattgaaagttcggagagtttcattagtcaattga 525
Query: 146 cttactcagttgaaacatcattagggacttcaaaaactgcctgtaaccatacacgataca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cttactcagttgaaacatcattagggacttcaaaaactgcctgtaaccatacacgataca 465
Query: 206 tctttagttgtcttttacgattgaccaatagtcttctgtctgttccaatctgtttctcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctttagttgtcttttacgattgaccaatagtcttctgtctgttccaatctgtttctcaa 405
Query: 266 cgaaatatttttcagtgaagatgtcgcgcagttcttgttcagtgaagaaatacactcttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cgaaatatttttcagtgaagatgtcgcgcagttcttgttcagtgaagaaatacactcttg 345
Query: 326 ttccatctcctctaacgtagaaattatcatccagtagtctattctttttgaaccgtacct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttccatctcctctaacgtagaaattatcatccagtagtctattctttttgaaccgtacct 285
Query: 386 gagctagatcataacgtccataatcacggaacagtatcttaccacctggctttaggattt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gagctagatcataacgtccataatcacggaacagtatcttaccacctggctttaggattt 225
Query: 446 tatgaaggttatccattgccttactccattgttcaggtgatagtgcactaaacacgaaga 505
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tctgaaggttatccattgccttactccattgttcaggtgatagtgcactaaacacgaaga 165
Query: 506 tcataacagcaatatcgacagaatttggctctatcccgtccggtaattctccttcaatat 565
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 164 tcatcacagcaatatcgacagaatttggctctatcccgtccggtaattctccttcaatct 105
Query: 566 ttgcaagatcccacactgttgcgtgtcc 593
|||| ||||||| | |||||||||||||
Sbjct: 104 ttgccagatccccctctgttgcgtgtcc 77
>3x_Contig471
Length = 2964
Score = 496 bits (250), Expect = e-140
Identities = 286/293 (97%), Gaps = 4/293 (1%)
Strand = Plus / Minus
Query: 597 ttttggattgaattgatctgaagtcttcactaactcgacagctcttggagcaaagtcagc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 ttttggattgaattgatctgaagtcttcactaactcgacagctcttggagcaaagtcagc 2905
Query: 657 tgctactattctcaattgttcgttttgattctcagtcagaatttgggaagaacgtgttac 716
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2904 tgctactattctcaattgttcgttttgattctcagtcagaatt-gggaagaacgtgttac 2846
Query: 717 cggcaccacatccaatttcaaaaacgggtactggaccagcatcaggtttagtcgcttcat 776
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2845 cggcaccacatccaatttcaaaaacggtaactggaccagcatcaggtttagtcgcttcat 2786
Query: 777 ataaagatgggaactcgatttgaagccattttctgtctttgaagaaattttccctattgt 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2785 ataaagatgggaactcgatttgaagccattttctgtctttgaagaaattttccctattgt 2726
Query: 837 ttntat-aaatatgtccca-taacgagcagga-tactattgtatagattcttg 886
|| ||| |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 2725 ttttataaaatatgtcccagtaacgagcaggattactattgtatagattcttg 2673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6426
Number of Sequences: 1807
Number of extensions: 6426
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)