BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG01RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig393 1082 0.0
3x_Contig1408 260 4e-69
>3x_Contig393
Length = 1308
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Minus
Query: 48 accgcaacagaatattattatcaagaaacgaagaaaaaatgtctttaagtcgtgaagatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 accgcaacagaatattattatcaagaaacgaagaaaaaatgtctttaagtcgtgaagatt 487
Query: 108 cagtgtatttagccaaattggctgaacaagcagaacgttatgaagaaatggtggaaaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cagtgtatttagccaaattggctgaacaagcagaacgttatgaagaaatggtggaaaaca 427
Query: 168 tgaagaatgttgcatcttctggtcaagaattgtccgttgaagaaagaaacttgttatctg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgaagaatgttgcatcttctggtcaagaattgtccgttgaagaaagaaacttgttatctg 367
Query: 228 ttgcttacaagaacgttattggtgctcgtcgtgcatcctggagaatcgtttcctccattg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttgcttacaagaacgttattggtgctcgtcgtgcatcctggagaatcgtttcctccattg 307
Query: 288 aacaaaaagaggaagctaaggaaaaatctgaacatcaagttcaattgatcagaacttacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aacaaaaagaggaagctaaggaaaaatctgaacatcaagttcaattgatcagaacttacc 247
Query: 348 gttcgaagatcgaatccgaattgactaagatctgtgatgatatcttgtcagtgttagata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gttcgaagatcgaatccgaattgactaagatctgtgatgatatcttgtcagtgttagata 187
Query: 408 ctcatttgattccaagtgctacaaccggtgaatccaaggtattctactataagatgaagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctcatttgattccaagtgctacaaccggtgaatccaaggtattctactataagatgaagg 127
Query: 468 gtgactaccaccgttatctggccgaattctcttccggtgacgttagagaaagtgctactc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtgactaccaccgttatctggccgaattctcttccggtgacgttagagaaagtgctactc 67
Query: 528 aagcctctttggaagcctacaaggaagcatccgatatcgccaccacagaattgccaccaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aagcctctttggaagcctacaaggaagcatccgatatcgccaccacagaattgccaccaa 7
Query: 588 ctcatc 593
||||||
Sbjct: 6 ctcatc 1
>3x_Contig1408
Length = 6607
Score = 260 bits (131), Expect = 4e-69
Identities = 179/190 (94%), Gaps = 4/190 (2%)
Strand = Plus / Minus
Query: 710 agataccttatccgaagaaatcataca-ggacagtactttgatcatgcaattgntgagag 768
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 6374 agataccttatccgaagat-tcatacaaggacagtactttgatcatgcaattgttgagag 6316
Query: 769 aatacttgaccttgtggacttctgatatgtctgagactggtcaag-agaccaacctgctg 827
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6315 ataacttgaccttgtggacttctgatatgtctgagactggtcaagaagaccaacctgctg 6256
Query: 828 aaggtgc-taaatgctctaacgtccggtatttacccttcactacgccccgccatcaaagg 886
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6255 aaggtgcttaaatgctctaacgtccggtattaccccttcactacgccccgccatcaaaga 6196
Query: 887 aaaaaaaata 896
||||||||||
Sbjct: 6195 aaaaaaaata 6186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6950
Number of Sequences: 1807
Number of extensions: 6950
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)