BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG02FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1530 0.0
>3x_Contig1735
Length = 19486
Score = 1530 bits (772), Expect = 0.0
Identities = 827/840 (98%), Gaps = 4/840 (0%)
Strand = Plus / Plus
Query: 87 atcaaacctccttttcaatgtcctagtttgcctgtaatttaatccagatcgcctattaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15455 atcaaacctccttttcaatgtcctagtttgcctgtaatttaatccagatcgcctattaaa 15514
Query: 147 ctccttgagcaaagtgttccatgatttcatcctatggctatgtgtttgaagatgtggctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15515 ctccttgagcaaagtgttccatgatttcatcctatggctatgtgtttgaagatgtggctt 15574
Query: 207 gtattctcccaaaagagacaccaagagttcatccaaattagaatgcgaatatatgtgtga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15575 gtattctcccaaaagagacaccaagagttcatccaaattagaatgcgaatatatgtgtga 15634
Query: 267 catgtaggttagatttcgatattaaaaagtagcagaaaagggaagtatcaaggtgtgata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15635 catgtaggttagatttcgatattaaaaagtagcagaaaagggaagtatcaaggtgtgata 15694
Query: 327 acttcacaccgcaattcagtgtgacaatatactgtttcaagtcacacctaactcatattt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15695 acttcacaccgcaattcagtgtgacaatatactgtttcaagtcacacctaactcatattt 15754
Query: 387 ctcatcctctcaatttcttcttgcatgtatcttatctgaaccggtatacgctgattagaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15755 ctcatcctctcaatttcttcttgcatgtatcttatctgaaccggtatacgctgattagaa 15814
Query: 447 tttacctttttctttaaaagttatgaaaagtgatattggaacaaagttactattaccaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15815 tttacctttttctttaaaagttatgaaaagtgatattggaacaaagttactattaccaac 15874
Query: 507 tttaatgagatacggaagaattcactggaaataggttactgtagagagtaagttcactag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15875 tttaatgagatacggaagaattcactggaaataggttactgtagagagtaagttcactag 15934
Query: 567 ttgaaagaggatacctatcaacacaacttgtgaatctatccaggtaatttttcggacaca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15935 ttgaaagaggatacctatcaacacaacttgtgaatctatccaggtaatttttcggacaca 15994
Query: 627 tgataaaaagctggacccgtgttgttaaaagatcggcctcgcaactatctgctacgcaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15995 tgataaaaagctggacccgtgttgttaaaagatcggcctcgcaactatctgctacgcaat 16054
Query: 687 tcaaacgtattattggtgcgtcatcaatccaatcaaactctagttactctactgattcat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16055 tcaaacgtattattggtgcgtcatcaatccaatcaaactctagttactctactgattcat 16114
Query: 747 tagaacaacagtacaaggacaagcttttggacaaagctcgcgaacaatgttttaatagca 806
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 16115 tagaacaacagtacaaggacaagcttttggacaaggctcgcgaacaaggttttaatagca 16174
Query: 807 ttgaaggaacttaagaattctctgaaagaagaaattggaaagaataaactccgatttaaa 866
||| ||||||||||||||||| ||||||||||||||| |||||| ||||| ||| |||||
Sbjct: 16175 ttg-aggaacttaagaattctttgaaagaagaaattgaaaagaagaaact-cgagttaaa 16232
Query: 867 cagaattgatccactgaaaggaatgggaagactacgaaacaagtaaccaaaatgtcatct 926
||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 16233 cagaattgatccactgaaa-gaattggaagactacg-aacaaagaaccaaaatgtcatct 16290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6977
Number of Sequences: 1807
Number of extensions: 6977
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)