BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG02RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1465 0.0
>3x_Contig1613
Length = 13977
Score = 1465 bits (739), Expect = 0.0
Identities = 816/837 (97%), Gaps = 4/837 (0%)
Strand = Plus / Plus
Query: 52 aagtactttgttatcagcaacgtcacgaatttttccagaccatgagtcccacttatcagc 111
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 aagtacttcgttatcagcaacgtcacgaatttttccagaccatgagtcccacttatcagc 1546
Query: 112 caaatttactggtccgacttgttcactcataccgtactgagtaaccattgctctagcagt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 caaatttactggtccgacttgttcactcataccgtactgagtaaccattgctctagcagt 1606
Query: 172 gttggtagcattttgtaaatccgaaccacaaccactggtattattttccttaccataaat 231
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1607 gttggtagcattttgtaaatccgaaccacaaccactggtagtattttccttaccataaat 1666
Query: 232 cagttcttctgcaatcttaccacccatgcacacatctaacctagctagacattctttctt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 cagttcttctgcaatcttaccacccatgcacacatctaacctagctagacattctttctt 1726
Query: 292 agtgatgtccaccttatccatttcaggaagttggaaagtgatacctaatgccctgcctct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1727 agtgatgtccaccttatccatttcaggaagttggaaagtgatacctaatgccctgcctct 1786
Query: 352 tggcaagatagttgctttgtataatggcgttgccccggcagtgtacagtgccatcaatgc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1787 tggcaagatagttgctttgtataatggcgttgccccggcagtgtacagtgccatcaatgc 1846
Query: 412 atgcccggcttcatgataagcggtggctcttttagtagcttcagtgagaaccatagtttt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 atgcccggcttcatgataagcggtggctcttttagtagcttcagtgagaaccatagtttt 1906
Query: 472 cctttcagcacccatcaagattttatcctttgcccattcaaagtgctgcatatcgacagc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1907 cctttcagcacccatcaagattttatcctttgcccattcaaagtgctgcatatcgacagc 1966
Query: 532 aatagcatttttctgacaagcgtatacggcggcttggttaactaaattcatcaactcagc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 aatagcatttttctgacaagcgtatacggcggcttggttaactaaattcatcaactcagc 2026
Query: 592 accagaaagacctgnggttcctcttgcaatgatagttgggtccacatcatgagcaacagt 651
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2027 accagaaagacctggggttcctcttgcaatgatagttgggtccacatcaggagcaacagt 2086
Query: 652 aaccttcttcatatgatgtctcanaatgtcagcacgcccgcgaacatcatgtaagtcaac 711
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 2087 aaccttcttcatatgatgtctcaaaatgtcagcacgcccgcgaacatcaggtaagtcaac 2146
Query: 712 attgacgaccttatcgaatctacctgggtctgtcaaagccttatccaatgattctgggaa 771
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2147 attgacgaccttatcgaatctacctggtcttgtcaaagccttatccaatgattctgggaa 2206
Query: 772 gttagtggcaccgatgattattataccgcttgtttgggaaaacccattccatt-aaccaa 830
|||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 2207 gttagtggcaccgatgataattataccgcttgtttgggaaaacccatccaattcaaccaa 2266
Query: 831 caattgatttcaaaattgtttttgcgtaagccttgattcttgggaattacgcttacc 887
||||||| |||||| || ||||||||||| ||||| |||| || ||||||||||||
Sbjct: 2267 caattga-ttcaaagtttgttttgcgtaag-cttga-tctttgggattacgcttacc 2320
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5701
Number of Sequences: 1807
Number of extensions: 5701
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)