BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG03RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1455 0.0
>3x_Contig1509
Length = 8584
Score = 1455 bits (734), Expect = 0.0
Identities = 829/850 (97%), Gaps = 8/850 (0%)
Strand = Plus / Plus
Query: 48 attcactcttcctttggagattgtcactaagttcaataattatgtgtaatcatcgtttaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 attcactcttcctttggagattgtcactaagttcaataattatgtgtaatcatcgtttaa 7120
Query: 108 tatgtagaaataaaatatctatacttcactttttttt-aagctcgctgtttgtcttcatt 166
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7121 tatgtagaaataaaatatctatacttcacttttttttcaagctcgctgtttgtcttcatt 7180
Query: 167 cgatattatctttgatgtgcaatatcgatttcaatgaactagagtcgattagctgtaaga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7181 cgatattatctttgatgtgcaatatcgatttcaatgaactagagtcgattagctgtaaga 7240
Query: 227 gtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgagatttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7241 gtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgagatttt 7300
Query: 287 gagccagttctttccattccatttggatctcatctcgccattgtctcagttccacaacgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7301 gagccagttctttccattccatttggatctcatctcgccattgtctcagttccacaacgg 7360
Query: 347 ataacatggaattgatatcctggtaattaacatcagtatttgttgcacttcgtataagct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7361 ataacatggaattgatatcctggtaattaacatcagtatttgttgcacttcgtataagct 7420
Query: 407 caatggctctgcatttttcgattagtcttgtccttaaagagtcatacttatgtaggagac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7421 caatggctctgcatttttcgattagtcttgtccttaaagagtcatacttatgtaggagac 7480
Query: 467 tttgatccatttcattttcattatcgataagtctgaatctaggtaggttggctagatcac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7481 tttgatccatttcattttcattatcgataagtctgaatctaggtaggttggctagatcac 7540
Query: 527 tgtgtaacttgggaaaactaactccatctccgttcaacatatttcccaaatctagacgtt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7541 tgtgtaacttgggaaaactaactccatctccgttcaacatatttcccaaatctagacgtt 7600
Query: 587 gtaaatcaccgatatttgtcaagacatcatagtattcatttcgtttccaatcatctatat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7601 gtaaatcaccgatatttgtcaagacatcatagtattcatttcgtttccaatcatctatat 7660
Query: 647 attcgactagctcttttcttc-atatatcgtagttcacatcatacttcagtgcattgtcc 705
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7661 attcgactagctc-tttcttcaatatatcgtagttcacatcatacttcagtgcattgtcc 7719
Query: 706 aatcttgcttgttggtcatcattc-aagaaggaaattttggtcttatgttttgcccgta- 763
|||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 7720 aatcttgcttgttgttcatcattcaaagaaggaaattttggtcttatgttttg-ccgtac 7778
Query: 764 cagttggatgatctctgatttcagat-catactgtttgcagtttcttgtcca-ttacgtg 821
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 7779 cagttgaatgatctctgattccagatccatactgtttgcagtttcttgtccagttacgtg 7838
Query: 822 tatcgggctcccgttgtttggttggttggttatttatgccggtattttggctctgtcatc 881
||||| ||||| ||||||| ||| ||| |||| ||||| | ||||||| ||||||||||
Sbjct: 7839 tatcgtgctccgtttgtttgtttgtttgtttatctatgcggttattttgtctctgtcatc 7898
Query: 882 gttccaaaat 891
||||||||||
Sbjct: 7899 gttccaaaat 7908
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7318
Number of Sequences: 1807
Number of extensions: 7318
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)