BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG04FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1562 0.0
>3x_Contig1787
Length = 34189
Score = 1562 bits (788), Expect = 0.0
Identities = 814/820 (99%), Gaps = 2/820 (0%)
Strand = Plus / Plus
Query: 86 tgcaaaccgattcttgaagttagtggaacaataggggcatatcatctcaaagttcttgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25526 tgcaaaccgattcttgaagttagtggaacaataggggcatatcatctcaaagttcttgat 25585
Query: 146 atacctttcggatagctccttgtcaccaggcaagtccaacacaggtagttcatcccatgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25586 atacctttcggatagctccttgtcaccaggcaagtccaacacaggtagttcatcccatgg 25645
Query: 206 tataaagaacggggagttgaaagagttgaaatgctttttgtgctttaatttcttactatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25646 tataaagaacggggagttgaaagagttgaaatgctttttgtgctttaatttcttactatg 25705
Query: 266 gaaatctcttgtcatgacatgtatatgtgtattagccattgatggagtgctatgtactcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25706 gaaatctcttgtcatgacatgtatatgtgtattagccattgatggagtgctatgtactcc 25765
Query: 326 tgattggacaaaattcgccaagaaagcttctttctctttcaaggatatatcttttatgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25766 tgattggacaaaattcgccaagaaagcttctttctctttcaaggatatatcttttatgtc 25825
Query: 386 atatttttttatgaattgagtccaacagaatcgtttagcccaatcaatatgccattgaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25826 atatttttttatgaattgagtccaacagaatcgtttagcccaatcaatatgccattgaag 25885
Query: 446 ctgcaccttgatgccattgtcgattgtggtgggatgagaattgctgatcttatgacttct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25886 ctgcaccttgatgccattgtcgattgtggtgggatgagaattgctgatcttatgacttct 25945
Query: 506 tggcaaaactaaaaaatgttcttcagatttagggaacttatcatgtataatggtcgctat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25946 tggcaaaactaaaaaatgttcttcagatttagggaacttatcatgtataatggtcgctat 26005
Query: 566 gtcgtcaaagtagagtacttcaggcaatcgttctggacacaaaacgtacggtctgagacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26006 gtcgtcaaagtagagtacttcaggcaatcgttctggacacaaaacgtacggtctgagacc 26065
Query: 626 tatgctgaacgagttctccctgtttttctcgtcaccatgggcgtttggtacataagtggg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26066 tatgctgaacgagttctccctgtttttctcgtcaccatgggcgtttggtacataagtggg 26125
Query: 686 tttgaaaatctgcagatactgattataagtcattccagttgtgatttgtggatggatttt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26126 tttgaaaatctgcagatactgattataagtcattccagttgtgatttgtggatggatttt 26185
Query: 746 gttcatatggaaaccaattaaatctctgttcttgccgatgaactgcttttcgcaatgttt 805
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 26186 gttcatatggaaaccaattaaatctctgttcttgccgatgaactgctttcggcaatgttt 26245
Query: 806 acagtacacaatatctttgtttgcgtcttcatttaatttgaataaaatgagtcgt-aacc 864
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct: 26246 acagtacacaatatctttgttggcgtcttcatttaatttgaat-aaatgagtcgtaaacc 26304
Query: 865 ccgatttatctgagaaagtccattgatcgcctggactttc 904
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 26305 ccgatttatctgagatagtccattgatcgcctggactttc 26344
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6383
Number of Sequences: 1807
Number of extensions: 6383
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)