BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG05FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig853 1526 0.0
>3x_Contig853
Length = 2329
Score = 1526 bits (770), Expect = 0.0
Identities = 796/802 (99%), Gaps = 2/802 (0%)
Strand = Plus / Minus
Query: 87 gttccttgtccctaaaataaaccgattataaagtcaacagcaacaatgctaagcgatatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 gttccttgtccctaaaataaaccgattataaagtcaacagcaacaatgctaagcgatatt 1682
Query: 147 ccgttgccactcgtatcacactggtatgttatgtgcttccagtgaatactgattatctat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 ccgttgccactcgtatcacactggtatgttatgtgcttccagtgaatactgattatctat 1622
Query: 207 gttactcgacggtacagggagtttaaggagtgttatttggctttctttctttgtttttgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 gttactcgacggtacagggagtttaaggagtgttatttggctttctttctttgtttttgt 1562
Query: 267 gttgacatggtgtggtgatgtgtgtgattcaaattccaattatttcgattctatttatgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 gttgacatggtgtggtgatgtgtgtgattcaaattccaattatttcgattctatttatgt 1502
Query: 327 acattctcttgattaaactcaaaacagagtcatgggctcagccgtgtacggtccaagaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 acattctcttgattaaactcaaaacagagtcatgggctcagccgtgtacggtccaagaat 1442
Query: 387 agcaatttagggcatgaggaggctgctatagtgtgcttcaggaaatcgtcagagtttatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 agcaatttagggcatgaggaggctgctatagtgtgcttcaggaaatcgtcagagtttatt 1382
Query: 447 caagaacttgatttggatgtacgtaaggatatttagtttatctctcgggattctgtatct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 caagaacttgatttggatgtacgtaaggatatttagtttatctctcgggattctgtatct 1322
Query: 507 aaattcaatagatttataaaagtttataaggcagaatgttacacggcgggacgagcctca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaattcaatagatttataaaagtttataaggcagaatgttacacggcgggacgagcctca 1262
Query: 567 gaatctgagggtctattcgccggtcgctcgctttgtattatcttcatttatcttggactt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gaatctgagggtctattcgccggtcgctcgctttgtattatcttcatttatcttggactt 1202
Query: 627 taccacctttcttgatgattctgacagcaacagatagcatggttgataaccagaataagt 686
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1201 taccacctttcttgatgattctgacagcaacagaaagcatggttgataaccagaataagt 1142
Query: 687 tcaaaacgtcaaggatcaggttaccggtcacaatgatggccgtttcgagaggtaagaagc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcaaaacgtcaaggatcaggttaccggtcacaatgatggccgtttcgagaggtaagaagc 1082
Query: 747 ttggatcgtttctgatgttgtagaaatcggtacacagttggtaggattggtagaaacccc 806
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1081 ttggatcgtttctgatgttgtagaaatcggtacacagttggtagaattggtagaaacccc 1022
Query: 807 aacagattcttgccaagaagaagatcaagatcaaaacgacattggttcaccaatgggatc 866
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 1021 agcagattcttgccaagaagaagatcaagatcaaaacgacatt-gttcaccaattggatc 963
Query: 867 acgttacacacccttggccatg 888
|||||||||| |||||||||||
Sbjct: 962 acgttacaca-ccttggccatg 942
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6536
Number of Sequences: 1807
Number of extensions: 6536
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)