BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG06FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1604 0.0
>3x_Contig1541
Length = 10565
Score = 1604 bits (809), Expect = 0.0
Identities = 854/863 (98%), Gaps = 5/863 (0%)
Strand = Plus / Plus
Query: 86 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7215 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 7274
Query: 146 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7275 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 7334
Query: 206 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7335 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 7394
Query: 266 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7395 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 7454
Query: 326 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7455 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 7514
Query: 386 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7515 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 7574
Query: 446 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7575 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatattttgg 7634
Query: 506 ttcggtaactaatcaaacatgaggatcaaccagttaggataaagaaagtttgatactatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7635 ttcggtaactaatcaaacatgaggatcaaccagttaggataaagaaagtttgatactatc 7694
Query: 566 cacgtgaatatcacgtggatcatacggaaagagattaaacctattttgacaatggtaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7695 cacgtgaatatcacgtggatcatacggaaagagattaaacctattttgacaatggtaaga 7754
Query: 626 atttgaatacttcaagatatgatgaaagcatgatatttatgtaggaaagtttactcagaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7755 atttgaatacttcaagatatgatgaaagcatgatatttatgtaggaaagtttactcagaa 7814
Query: 686 gtgatttgaaactgtttatcaggacaacagtttccgattcaaaatatactgagagattat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7815 gtgatttgaaactgtttatcaggacaacagtttccgattcaaaatatactgagagattat 7874
Query: 746 ttcaacaattgcttgtttgatgactgcctgaactcntttctttgatgattaacanagcag 805
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 7875 ttcaacaattgcttgtttgatgactgcctgaactcttttctttgatgattaacaaagcag 7934
Query: 806 cacctgggtttgtttcctcaaattcagtatgggggtaccggggtcatacgctattgaaat 865
|||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 7935 cacctggg-ttgtttcctcaaattcagtat-ggggtaccggggtcaaacgctattgaaac 7992
Query: 866 cgatgatgatcccatttatgggataaacaaagatatattttctgcaggtttgtcaaaact 925
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7993 cgatgatgatcccatttatgggataaacaaagatata-tttctgcaggtttgtcaaaact 8051
Query: 926 tgccctac-aattacgagtcgct 947
|| ||||| ||||||||||||||
Sbjct: 8052 tg-cctacaaattacgagtcgct 8073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7284
Number of Sequences: 1807
Number of extensions: 7284
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)