BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG06RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1524 0.0
>3x_Contig675
Length = 2979
Score = 1524 bits (769), Expect = 0.0
Identities = 847/871 (97%), Gaps = 3/871 (0%)
Strand = Plus / Minus
Query: 53 gcttgcaacaatgtattaaggttagtcctttgtagtatttcgggcttcagcaaacgcttt 112
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1673 gcttgcaacaatgtattaaggttag-cctttgtagtatttcgggcttcagcaaacgcttt 1615
Query: 113 tttcatcagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 tttcatcagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaat 1555
Query: 173 cacatcaataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 cacatcaataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcag 1495
Query: 233 agttgttccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcgga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 agttgttccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcgga 1435
Query: 293 gaaacaacaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcata 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 gaaacaacaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcata 1375
Query: 353 ggaataaaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 ggaataaaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggt 1315
Query: 413 atacaagggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 atacaagggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttt 1255
Query: 473 tttttttctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccataagca 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1254 tttttttctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagca 1195
Query: 533 acgtacgactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaatt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 acgtacgactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaatt 1135
Query: 593 agccccaaggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 agccccaaggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcac 1075
Query: 653 acacagaaacttacagctgagagaaagataggaaacagtagataaaaagattaagccatg 712
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||
Sbjct: 1074 acacagaaacttacagctgagagaaagaaaggaaacagtagaaaaaaagaaaaagcaatg 1015
Query: 713 atgaagtaagcctgattaacatggntggtgcgagcgccaatgcnttgcatactttacctg 772
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 1014 atgaagtaagcctgattaacatgg-tggtgcgagcgccaatgctttgcatactttacctg 956
Query: 773 cctctgttccactgnaaatnncacagagaagtgtttgcagcagattacacgtacacagac 832
|||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 955 cctctgttccactgaaaatccaacagagaagtgtttgcagcagataacacgaacacagac 896
Query: 833 atcagtttttttttccccgttcagggtgaattcatcgnctcccttcacttcgtattatta 892
||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
Sbjct: 895 atcagtttttttttccccggtcagggtgaattcatcgcctccctccacttcgtattatca 836
Query: 893 cccctcggatttttggattcgtnatataaga 923
|||||| || |||| ||||||| ||| ||||
Sbjct: 835 cccctc-gagtttttgattcgtaatagaaga 806
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,905
Number of Sequences: 1807
Number of extensions: 14905
Number of successful extensions: 191
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)